STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM13675.1Hypothetical protein. (179 aa)    
Predicted Functional Partners:
AFM13673.1
KEGG: lbf:LBF_1400 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.773
AFM13674.1
Uncharacterized protein family UPF0310; PFAM: Protein of unknown function DUF55; COGs: COG2947 conserved hypothetical protein; InterPro IPR002740; KEGG: kko:Kkor_2472 hypothetical protein; PFAM: Uncharacterised protein family UPF0310; SPTR: Putative uncharacterized protein.
       0.773
AFM13671.1
InterPro IPR001938; PFAM: Thaumatin, pathogenesis-related.
       0.620
AFM13672.1
PFAM: Putative modulator of DNA gyrase; COGs: COG0312 Zn-dependent protease and their inactivated homologs; KEGG: peptidase U62 modulator of DNA gyrase; SPTR: Peptidase U62 modulator of DNA gyrase.
       0.620
Your Current Organism:
Turneriella parva
NCBI taxonomy Id: 869212
Other names: T. parva DSM 21527, Turneriella parva DSM 21527, Turneriella parva H, Turneriella parva NCTC 11395, Turneriella parva str. DSM 21527, Turneriella parva strain DSM 21527
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.