STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM13734.1PFAM: Magnesium chelatase, subunit ChlI; TIGRFAM: Mg chelatase-related protein; COGs: COG0606 ATPase with chaperone activity; InterPro IPR004482:IPR000523; KEGG: tsc:TSC_c02140 putative Mg chelatase-like protein; PFAM: Magnesium chelatase, ChlI subunit; SPTR: Putative Mg chelatase-like protein; TIGRFAM: Mg chelatase-related protein. (500 aa)    
Predicted Functional Partners:
AFM13836.1
PFAM: DNA recombination-mediator protein A; TIGRFAM: DNA protecting protein DprA; COGs: COG0758 Rossmann fold nucleotide-binding protein involved in DNA uptake; InterPro IPR003488; KEGG: ppm:PPSC2_c2080 DNA protecting protein dpra; PFAM: DNA recombination-mediator protein A; SPTR: DNA protecting protein DprA; TIGRFAM: DNA recombination-mediator protein A.
 
 0.899
def
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
     0.855
ruvC
Holliday junction endonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.
 
   
 0.730
AFM13419.1
PFAM: Competence protein; TIGRFAM: ComEC/Rec2-related protein; COGs: COG0658 membrane metal-binding protein; InterPro IPR004477; KEGG: lbj:LBJ_0679 competence protein; PFAM: ComEC/Rec2-related protein; SPTR: Competence protein; TIGRFAM: ComEC/Rec2-related protein.
 
  
 0.549
AFM13735.1
2-methylaconitate cis-trans isomerase; PFAM: PrpF protein; TIGRFAM: probable AcnD-accessory protein PrpF; COGs: COG2828 conserved hypothetical protein; InterPro IPR012709:IPR007400; KEGG: maq:Maqu_1663 putative AcnD-accessory protein PrpF; PFAM: PrpF protein; SPTR: 2-methylaconitate cis-trans isomerase; TIGRFAM: PrpF, AcnD-accessory.
       0.513
AFM12187.1
Hypothetical protein; COGs: COG1040 amidophosphoribosyltransferase; KEGG: chl:Chy400_1996 amidophosphoribosyltransferase-like protein; SPTR: Amidophosphoribosyltransferase-like protein.
  
  
 0.411
AFM13736.1
Integrase catalytic region; PFAM: Integrase core domain; COGs: COG2826 Transposase and inactivated derivatives IS30 family; InterPro IPR001584; KEGG: abc:ACICU_02563 IS30 family transposase; PFAM: Integrase, catalytic core; SPTR: Transposase of ISCARN114, IS30 family.
       0.400
Your Current Organism:
Turneriella parva
NCBI taxonomy Id: 869212
Other names: T. parva DSM 21527, Turneriella parva DSM 21527, Turneriella parva H, Turneriella parva NCTC 11395, Turneriella parva str. DSM 21527, Turneriella parva strain DSM 21527
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