STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM13804.1KEGG: aba:Acid345_0108 hypothetical protein; SPTR: Putative uncharacterized protein. (605 aa)    
Predicted Functional Partners:
AFM13803.1
KEGG: app:CAP2UW1_0240 hypothetical protein; SPTR: Putative uncharacterized protein; manually curated.
     0.993
AFM13806.1
PFAM: Domain of Unknown Function (DUF350); InterPro IPR007140; KEGG: vpe:Varpa_5988 hypothetical protein; PFAM: Protein of unknown function DUF350; SPTR: Putative uncharacterized protein.
 
     0.908
AFM11413.1
Hypothetical protein; PFAM: SPFH domain / Band 7 family; COGs: COG4260 Putative virion core protein (lumpy skin disease virus); KEGG: lbf:LBF_0154 hypothetical protein; SPTR: Putative uncharacterized protein.
 
  
 0.828
speE
Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
 
     0.808
AFM13769.1
FAD dependent oxidoreductase; PFAM: Flavin containing amine oxidoreductase; COGs: COG1232 Protoporphyrinogen oxidase; InterPro IPR006076; KEGG: lbl:LBL_3022 amino oxidase; PFAM: FAD dependent oxidoreductase; SPTR: Amino oxidase.
 
     0.784
AFM13805.1
Hypothetical protein.
       0.773
speE-2
Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
 
     0.608
AFM12532.1
Putative peptidoglycan peptidase; PFAM: Orthopoxvirus protein of unknown function (DUF830); InterPro IPR010529; KEGG: putative peptidoglycan peptidase; SPTR: Putative uncharacterized protein.
  
     0.583
AFM13807.1
AsmA family protein; InterPro IPR007844; KEGG: spl:Spea_2409 AsmA family protein; PFAM: AsmA; SPTR: AsmA family protein.
       0.534
pgk
PFAM: Phosphoglycerate kinase; COGs: COG0126 3-phosphoglycerate kinase; HAMAP: Phosphoglycerate kinase; InterPro IPR001576; KEGG: lil:LA_1703 phosphoglycerate kinase; PFAM: Phosphoglycerate kinase; SPTR: Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
       0.532
Your Current Organism:
Turneriella parva
NCBI taxonomy Id: 869212
Other names: T. parva DSM 21527, Turneriella parva DSM 21527, Turneriella parva H, Turneriella parva NCTC 11395, Turneriella parva str. DSM 21527, Turneriella parva strain DSM 21527
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.