STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM14396.1KEGG: tbd:Tbd_0465 hypothetical protein; SPTR: Putative uncharacterized protein. (317 aa)    
Predicted Functional Partners:
AFM11101.1
PFAM: Bacterial extracellular solute-binding protein, family 7; COGs: COG1638 TRAP-type C4-dicarboxylate transport system periplasmic component; InterPro IPR018389; KEGG: dps:DP0444 DctP (periplasmic C4-dicarboxylate binding protein); PFAM: Extracellular solute-binding protein, family 7, bacteria; SPTR: Putative ABC transporter periplasmic solute-binding protein.
 
 
 
 0.930
AFM13698.1
PFAM: Bacterial extracellular solute-binding protein, family 7; COGs: COG1638 TRAP-type C4-dicarboxylate transport system periplasmic component; InterPro IPR018389; KEGG: lbf:LBF_1423 TRAP-type C4-dicarboxylate transport system periplasmic protein; PFAM: Extracellular solute-binding protein, family 7, bacteria; SPTR: ABC-type transport system, periplasmic binding protein.
 
 
 
 0.899
AFM10762.1
PFAM: DctM-like transporters; TIGRFAM: TRAP transporter, DctM subunit; COGs: COG1593 TRAP-type C4-dicarboxylate transport system large permease component; InterPro IPR010656; KEGG: dps:DP0446 C4-dicarboxylate permease large subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; SPTR: Probable C4-dicarboxylate permease (Large subunit), probably cold-shock inducible.
 
   
 0.778
AFM14397.1
PFAM: Oxidoreductase FAD-binding domain; Oxidoreductase NAD-binding domain; COGs: COG0369 Sulfite reductase alpha subunit (flavoprotein); InterPro IPR013113:IPR001433; KEGG: gvi:gvip312 ferredoxin--NADP+ reductase; PFAM: Oxidoreductase FAD/NAD(P)-binding; FAD-binding 9, siderophore-interacting; SPTR: Ferredoxin--NADP+ reductase.
       0.773
AFM13696.1
PFAM: DctM-like transporters; TIGRFAM: TRAP transporter, DctM subunit; COGs: COG1593 TRAP-type C4-dicarboxylate transport system large permease component; InterPro IPR004681:IPR010656; KEGG: lbf:LBF_1421 TRAP-type C4-dicarboxylate transport system large permease protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; SPTR: Putative transport system; putative membrane protein; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit.
 
   
 0.711
AFM14398.1
Regulatory protein, FmdB family; PFAM: Zinc ribbon domain; TIGRFAM: putative regulatory protein, FmdB family; COGs: COG2331 conserved hypothetical protein; InterPro IPR013429; KEGG: ote:Oter_3821 FmdB family regulatory protein; PFAM: Regulatory protein, FmdB, putative; SPTR: Regulatory protein, FmdB family; TIGRFAM: Regulatory protein, FmdB, putative.
       0.682
AFM13697.1
PFAM: Tripartite ATP-independent periplasmic transporters, DctQ component; COGs: COG3090 TRAP-type C4-dicarboxylate transport system small permease component; InterPro IPR007387; KEGG: lbf:LBF_1422 TRAP-type C4-dicarboxylate transport system small permease protein; PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; SPTR: ABC-type transport system, permease; putative membrane protein.
 
     0.630
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
       0.576
hflX
GTP-binding proten HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.
       0.566
AFM14393.1
Protein of unknown function DUF192; PFAM: Uncharacterized ACR, COG1430; COGs: COG1430 conserved hypothetical protein; InterPro IPR003795; KEGG: lbl:LBL_0904 hypothetical protein; PFAM: Protein of unknown function DUF192; SPTR: Putative uncharacterized protein.
       0.566
Your Current Organism:
Turneriella parva
NCBI taxonomy Id: 869212
Other names: T. parva DSM 21527, Turneriella parva DSM 21527, Turneriella parva H, Turneriella parva NCTC 11395, Turneriella parva str. DSM 21527, Turneriella parva strain DSM 21527
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