STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM14636.1Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase; COGs: COG0300 Short-chain dehydrogenase of various substrate specificities; InterPro IPR002198; KEGG: lbj:LBJ_1636 short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR; SPTR: Short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (260 aa)    
Predicted Functional Partners:
AFM11585.1
Alpha/beta hydrolase fold containing protein; COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: lbl:LBL_2719 hydrolase; PFAM: Alpha/beta hydrolase fold-1; SPTR: Hydrolase with alpha/beta fold domain.
 
 
    0.790
AFM14639.1
PFAM: Radical SAM superfamily; Radical SAM N-terminal; TIGRFAM: uncharacterized radical SAM protein YgiQ; COGs: COG1032 Fe-S oxidoreductase; InterPro IPR006638:IPR013704:IPR007197; KEGG: lby:Lbys_1966 radical sam domain protein; PFAM: Radical SAM N-terminal; Radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: Radical SAM.
 
    0.607
AFM11512.1
Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase; COGs: COG4221 Short-chain alcohol dehydrogenase of unknown specificity; InterPro IPR002198; KEGG: abo:ABO_1918 short-chain dehydrogenase/reductase family protein; PFAM: Short-chain dehydrogenase/reductase SDR; SPTR: Short-chain dehydrogenase/reductase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.569
AFM14637.1
Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
       0.546
AFM14638.1
PilT protein domain protein; PFAM: PIN domain; COGs: COG3744 conserved hypothetical protein; InterPro IPR002716; KEGG: amc:MADE_00629 PilT protein domain protein; PFAM: PilT protein, N-terminal; SPTR: PilT protein domain protein.
       0.546
AFM11517.1
Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: lpp:lpp0291 hypothetical protein; PFAM: Short-chain dehydrogenase/reductase SDR; SPTR: Putative uncharacterized protein.
 
 
 0.506
Your Current Organism:
Turneriella parva
NCBI taxonomy Id: 869212
Other names: T. parva DSM 21527, Turneriella parva DSM 21527, Turneriella parva H, Turneriella parva NCTC 11395, Turneriella parva str. DSM 21527, Turneriella parva strain DSM 21527
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