STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JCM21142_62508Unannotated protein. (362 aa)    
Predicted Functional Partners:
JCM21142_2736
Unannotated protein.
   
 0.742
JCM21142_62458
Unannotated protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
  0.676
JCM21142_62469
Unannotated protein.
 
  
  0.636
JCM21142_62506
Unannotated protein.
       0.628
JCM21142_62505
Unannotated protein.
    
  0.607
JCM21142_52156
Unannotated protein.
 
   
  0.599
JCM21142_3917
Unannotated protein.
  
 
  0.591
JCM21142_72799
Unannotated protein; Belongs to the glycosyl hydrolase 26 family.
  
  
  0.566
JCM21142_62504
Unannotated protein.
       0.560
JCM21142_62466
Unannotated protein; Belongs to the glycosyl hydrolase 26 family.
 
  
  0.546
Your Current Organism:
Saccharicrinis fermentans
NCBI taxonomy Id: 869213
Other names: Cytophaga fermentans DSM 9555, Cytophaga fermentans DSM 9555 = JCM 21142, Cytophaga fermentans IFO 15936, Cytophaga fermentans JCM 21142, Cytophaga fermentans NBRC 15936, Cytophaga fermentans NCIMB 2218, S. fermentans DSM 9555 = JCM 21142, Saccharicrinis fermentans DSM 9555 = JCM 21142, Saccharicrinis fermentans JCM 21142 = DSM 9555
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.