STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KPL82108.1SgcQ protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (271 aa)    
Predicted Functional Partners:
KPL82107.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.786
KPL82106.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.777
gatC
PTS system galactitol-specific transporter subunit IIC; With GatAB forms a phosphoenolpyruvate-dependent sugar phosphotransferase transporter for galactitol; subunit IIC forms the translocation channel and contains the substrate binding site; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.727
KPL82109.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.690
KPL82197.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.483
KPL82104.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.473
KPL82105.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.473
KPL82112.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.455
KPL82484.1
DNA mismatch repair protein MutT; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.448
Your Current Organism:
Thermanaerothrix daxensis
NCBI taxonomy Id: 869279
Other names: Chloroflexi bacterium GNS-1, DSM 23592, JCM 16980, T. daxensis, strain GNS-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.