STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIJ32807.1PFAM: DNA polymerase III, delta subunit; TIGRFAM: DNA polymerase III, delta subunit; COGs: COG1466 DNA polymerase III delta subunit; InterPro IPR005790:IPR010372; KEGG: tgr:Tgr7_2277 DNA-directed DNA polymerase; PFAM: DNA polymerase III, delta; SPTR: DNA-directed DNA polymerase; TIGRFAM: DNA polymerase III, delta subunit. (344 aa)    
Predicted Functional Partners:
EIJ32963.1
TIGRFAM: DNA polymerase III, delta' subunit; COGs: COG2812 DNA polymerase III gamma/tau subunits; InterPro IPR004622; KEGG: tgr:Tgr7_1828 DNA-directed DNA polymerase; SPTR: DNA polymerase III, delta prime subunit; TIGRFAM: DNA polymerase III, delta prime subunit.
  
 
 0.999
EIJ33037.1
PFAM: Bacterial DNA polymerase III alpha subunit; PHP domain; OB-fold nucleic acid binding domain; TIGRFAM: DNA-directed DNA polymerase III (polc); COGs: COG0587 DNA polymerase III alpha subunit; InterProIPR004013:IPR011708:IPR004365:IPR004805:IPR 003141; KEGG: tgr:Tgr7_1176 DNA polymerase III, alpha subunit; PFAM: Bacterial DNA polymerase III, alpha subunit; PHP, C-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type; SMART: Polymerase/histidinol phosphatase, N-terminal; SPTR: DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit.
  
 0.999
EIJ35015.1
PFAM: DNA polymerase III beta subunit, C-terminal domain; DNA polymerase III beta subunit, N-terminal domain; DNA polymerase III beta subunit, central domain; TIGRFAM: DNA polymerase III, beta subunit; COGs: COG0592 DNA polymerase sliding clamp subunit (PCNA homolog); InterPro IPR001001; KEGG: tgr:Tgr7_0002 DNA polymerase III, beta subunit; PFAM: DNA polymerase III, beta chain; SMART: DNA polymerase III, beta chain; SPTR: DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta chain.
  
 
 0.999
EIJ36019.1
DNA polymerase III, subunits gamma and tau; PFAM: ATPase family associated with various cellular activities (AAA); DNA polymerase III subunits gamma and tau domain III; TIGRFAM: DNA polymerase III, subunit gamma and tau; COGs: COG2812 DNA polymerase III gamma/tau subunits; InterPro IPR003593:IPR012763:IPR003959; KEGG: tgr:Tgr7_1073 DNA polymerase III, subunits gamma and tau; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core; SPTR: DNA polymerase III, subunits gamma and tau; TIGRFAM: DNA polymerase III, subunit gamma/ tau; manually curated.
 
 
 0.999
EIJ33422.1
PFAM: DNA polymerase III chi subunit, HolC; COGs: COG2927 DNA polymerase III chi subunit; InterPro IPR007459; KEGG: nwa:Nwat_0389 DNA polymerase III subunit HolC; PFAM: DNA polymerase III chi subunit, HolC; SPTR: DNA polymerase III chi subunit HolC.
  
 
 0.998
EIJ34110.1
PFAM: Exonuclease; TIGRFAM: exonuclease, DNA polymerase III, epsilon subunit family; DNA polymerase III, epsilon subunit, Proteobacterial; COGs: COG0847 DNA polymerase III epsilon subunit and related 3'-5' exonuclease; InterPro IPR006054:IPR006309:IPR013520:IPR006055; KEGG: kko:Kkor_1929 DNA polymerase III subunit epsilon; PFAM: Exonuclease, RNase T/DNA polymerase III; SMART: Exonuclease; SPTR: DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase 3, epsilon subunit; DNA polymerase III, epsilon subunit.
    
 0.983
EIJ34467.1
PFAM: Exonuclease; COGs: COG2176 DNA polymerase III alpha subunit (gram-positive type); InterPro IPR006055:IPR013520; KEGG: alv:Alvin_0166 exonuclease RNase T and DNA polymerase III; PFAM: Exonuclease, RNase T/DNA polymerase III; SMART: Exonuclease; SPTR: Exonuclase.
    
 0.908
EIJ33119.1
RNAse T; PFAM: Exonuclease; TIGRFAM: ribonuclease T; COGs: COG0847 DNA polymerase III epsilon subunit and related 3'-5' exonuclease; HAMAP: Ribonuclease T; InterPro IPR013520:IPR005987:IPR006055; KEGG: tkm:TK90_0350 ribonuclease T; PFAM: Exonuclease, RNase T/DNA polymerase III; SMART: Exonuclease; SPTR: Ribonuclease T; TIGRFAM: Ribonuclease T.
  
 
 0.861
EIJ33466.1
Protein of unknown function DUF2133; PFAM: Uncharacterized protein conserved in bacteria (DUF2133); COGs: COG2976 conserved hypothetical protein; InterPro IPR018704; KEGG: tgr:Tgr7_2047 tetratricopeptide repeat family protein; PFAM: Protein of unknown function DUF2133; SPTR: Tetratricopeptide repeat family protein.
  
     0.755
EIJ33670.1
PFAM: Stringent starvation protein B; COGs: COG2969 Stringent starvation protein B; InterPro IPR007481; KEGG: eca:ECA0309 ClpXP protease specificity-enhancing factor; PFAM: Stringent starvation protein B; SPTR: Stringent starvation protein B.
  
     0.699
Your Current Organism:
Thiothrix nivea
NCBI taxonomy Id: 870187
Other names: T. nivea DSM 5205, Thiothrix nivea DSM 5205, Thiothrix nivea JP2, Thiothrix nivea str. DSM 5205, Thiothrix nivea strain DSM 5205
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