STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIJ33435.1Flavodoxin/nitric oxide synthase; PFAM: Flavodoxin; Metallo-beta-lactamase superfamily; COGs: COG0426 flavoprotein; InterPro IPR008254; KEGG: mmt:Metme_1624 flavodoxin/nitric oxide synthase; PFAM: Flavodoxin/nitric oxide synthase; SPTR: Flavodoxin/nitric oxide synthase. (429 aa)    
Predicted Functional Partners:
EIJ33436.1
Ferredoxin; PFAM: 2Fe-2S iron-sulfur cluster binding domain; COGs: COG0633 Ferredoxin; InterPro IPR001041; KEGG: alv:Alvin_3041 ferredoxin; PFAM: Ferredoxin; SPTR: Ferredoxin.
 
    0.898
EIJ34840.1
PFAM: Pyridine nucleotide-disulphide oxidoreductase; COGs: COG1251 NAD(P)H-nitrite reductase; InterPro IPR013027; KEGG: aeh:Mlg_1296 FAD-dependent pyridine nucleotide-disulfide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: FAD-dependent pyridine nucleotide-disulfide oxidoreductase.
 
  
 0.844
EIJ33437.1
Ferredoxin; PFAM: 2Fe-2S iron-sulfur cluster binding domain; InterPro IPR001041; KEGG: alv:Alvin_3042 ferredoxin; PFAM: Ferredoxin; SPTR: Ferredoxin.
 
    0.817
EIJ33660.1
PFAM: Pyridine nucleotide-disulphide oxidoreductase; Rubredoxin; COGs: COG1251 NAD(P)H-nitrite reductase; InterPro IPR004039:IPR013027; KEGG: hna:Hneap_2210 Rubredoxin-type Fe(Cys)4 protein; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Rubredoxin-type Fe(Cys)4 protein; SPTR: Rubredoxin-type Fe(Cys)4 protein.
 
  
 0.803
EIJ33434.1
Hypothetical protein.
       0.778
EIJ36894.1
Fe-S cluster assembly protein NifU; PFAM: NifU-like N terminal domain; BFD-like [2Fe-2S] binding domain; NifU-like domain; TIGRFAM: Fe-S cluster assembly protein NifU; COGs: COG0822 NifU homolog involved in Fe-S cluster formation; InterPro IPR002871:IPR007419:IPR001075:IPR010238; KEGG: alv:Alvin_1402 Fe-S cluster assembly protein NifU; PFAM: NIF system FeS cluster assembly, NifU, N-terminal; BFD-like [2Fe-2S]-binding region; NIF system FeS cluster assembly, NifU, C-terminal; SPTR: Fe-S cluster assembly protein NifU; TIGRFAM: NIF system FeS cluster assembly, NifU.
 
  
 0.765
EIJ34633.1
Rubredoxin-type Fe(Cys)4 protein; PFAM: Rubredoxin; COGs: COG1773 Rubredoxin; InterPro IPR004039; KEGG: brh:RBRH_01484 Rubredoxin; PFAM: Rubredoxin-type Fe(Cys)4 protein; SPTR: Rubredoxin.
 
  
 0.741
EIJ35123.1
Nitrite reductase (NAD(P)H), large subunit; PFAM: Pyridine nucleotide-disulphide oxidoreductase; BFD-like [2Fe-2S] binding domain; Nitrite and sulphite reductase 4Fe-4S domain; Nitrite/Sulfite reductase ferredoxin-like half domain; TIGRFAM: nitrite reductase [NAD(P)H], large subunit; COGs: COG1251 NAD(P)H-nitrite reductase; InterProIPR013027:IPR007419:IPR005117:IPR006067:IPR 012744; KEGG: tkm:TK90_0668 nitrite reductase (NAD(P)H), large subunit; PFAM: Nitrite/sulphite reductase 4Fe-4S region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; BFD-like [2Fe-2S]-binding region; [...]
 
  
 0.715
EIJ33432.1
Nitrogenase cofactor biosynthesis protein NifB; PFAM: Radical SAM superfamily; Dinitrogenase iron-molybdenum cofactor; TIGRFAM: nitrogenase cofactor biosynthesis protein NifB; COGs: COG0535 Fe-S oxidoreductase; InterPro IPR005980:IPR007197:IPR003731; KEGG: mmt:Metme_1621 nitrogenase cofactor biosynthesis protein NifB; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis; Radical SAM; SPTR: Nitrogenase cofactor biosynthesis protein NifB; TIGRFAM: Nitrogenase cofactor biosynthesis protein NifB.
 
  
 0.690
EIJ34359.1
Hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain; TIGRFAM: hemerythrin-like metal-binding domain; InterPro IPR012312:IPR012827; KEGG: aae:aq_1719 hypothetical protein; PFAM: Haemerythrin/HHE cation-binding motif; SPTR: Putative uncharacterized protein; TIGRFAM: Haemerythrin-like, metal-binding.
   
  
 0.662
Your Current Organism:
Thiothrix nivea
NCBI taxonomy Id: 870187
Other names: T. nivea DSM 5205, Thiothrix nivea DSM 5205, Thiothrix nivea JP2, Thiothrix nivea str. DSM 5205, Thiothrix nivea strain DSM 5205
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