STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIJ33436.1Ferredoxin; PFAM: 2Fe-2S iron-sulfur cluster binding domain; COGs: COG0633 Ferredoxin; InterPro IPR001041; KEGG: alv:Alvin_3041 ferredoxin; PFAM: Ferredoxin; SPTR: Ferredoxin. (94 aa)    
Predicted Functional Partners:
EIJ33206.1
PFAM: Pyridine nucleotide-disulphide oxidoreductase; COGs: COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductase; InterPro IPR001450:IPR013027; KEGG: mgm:Mmc1_2205 oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; SPTR: FAD-dependent pyridine nucleotide-disulfide oxidoreductase.
   
 0.991
EIJ33437.1
Ferredoxin; PFAM: 2Fe-2S iron-sulfur cluster binding domain; InterPro IPR001041; KEGG: alv:Alvin_3042 ferredoxin; PFAM: Ferredoxin; SPTR: Ferredoxin.
 
     0.933
EIJ33435.1
Flavodoxin/nitric oxide synthase; PFAM: Flavodoxin; Metallo-beta-lactamase superfamily; COGs: COG0426 flavoprotein; InterPro IPR008254; KEGG: mmt:Metme_1624 flavodoxin/nitric oxide synthase; PFAM: Flavodoxin/nitric oxide synthase; SPTR: Flavodoxin/nitric oxide synthase.
 
    0.898
EIJ36898.1
NifQ family protein; PFAM: NifQ; InterPro IPR006975; KEGG: mmt:Metme_1627 NifQ family protein; PFAM: NifQ; SPTR: NifQ family protein.
 
  0.895
EIJ36894.1
Fe-S cluster assembly protein NifU; PFAM: NifU-like N terminal domain; BFD-like [2Fe-2S] binding domain; NifU-like domain; TIGRFAM: Fe-S cluster assembly protein NifU; COGs: COG0822 NifU homolog involved in Fe-S cluster formation; InterPro IPR002871:IPR007419:IPR001075:IPR010238; KEGG: alv:Alvin_1402 Fe-S cluster assembly protein NifU; PFAM: NIF system FeS cluster assembly, NifU, N-terminal; BFD-like [2Fe-2S]-binding region; NIF system FeS cluster assembly, NifU, C-terminal; SPTR: Fe-S cluster assembly protein NifU; TIGRFAM: NIF system FeS cluster assembly, NifU.
 
 0.884
EIJ34053.1
PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; COGs: COG0838 NADH:ubiquinone oxidoreductase subunit 3 (chain A); HAMAP: NAD(P)H-quinone oxidoreductase subunit 3; InterPro IPR000440; KEGG: tgr:Tgr7_0986 NADH-ubiquinone/plastoquinone oxidoreductase chain 3; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase, chain 3; SPTR: NADH-quinone oxidoreductase subunit.
    
 
 0.852
EIJ34040.1
PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; COGs: COG1007 NADH:ubiquinone oxidoreductase subunit 2 (chain N); HAMAP: NAD(P)H-quinone oxidoreductase subunit 2; InterPro IPR010096:IPR001750; KEGG: tgr:Tgr7_0999 NADH dehydrogenase subunit N; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; SPTR: NADH-quinone oxidoreductase subunit N; TIGRFAM: NADH-quinone oxidoreductase, chain N.
    
   0.849
EIJ34046.1
PFAM: NADH dehydrogenase; COGs: COG1005 NADH:ubiquinone oxidoreductase subunit 1 (chain H); HAMAP: NAD(P)H-quinone oxidoreductase subunit 1; InterPro IPR001694; KEGG: tgr:Tgr7_0993 NADH dehydrogenase (quinone); PFAM: NADH:ubiquinone oxidoreductase, subunit 1; SPTR: NADH-quinone oxidoreductase subunit H.
   
   0.849
EIJ33103.1
PFAM: Tyrosine phosphatase family; COGs: COG2365 Protein tyrosine/serine phosphatase; InterPro IPR004861; KEGG: dol:Dole_3179 protein tyrosine/serine phosphatase; PFAM: Protein-tyrosine phosphatase, SIW14-like; SPTR: Protein tyrosine/serine phosphatase.
    
   0.830
EIJ36526.1
KEGG: alv:Alvin_3045 hypothetical protein; SPTR: Putative uncharacterized protein.
  
    0.817
Your Current Organism:
Thiothrix nivea
NCBI taxonomy Id: 870187
Other names: T. nivea DSM 5205, Thiothrix nivea DSM 5205, Thiothrix nivea JP2, Thiothrix nivea str. DSM 5205, Thiothrix nivea strain DSM 5205
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