STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIJ33436.1Ferredoxin; PFAM: 2Fe-2S iron-sulfur cluster binding domain; COGs: COG0633 Ferredoxin; InterPro IPR001041; KEGG: alv:Alvin_3041 ferredoxin; PFAM: Ferredoxin; SPTR: Ferredoxin. (94 aa)    
Predicted Functional Partners:
EIJ33437.1
Ferredoxin; PFAM: 2Fe-2S iron-sulfur cluster binding domain; InterPro IPR001041; KEGG: alv:Alvin_3042 ferredoxin; PFAM: Ferredoxin; SPTR: Ferredoxin.
 
     0.940
EIJ36898.1
NifQ family protein; PFAM: NifQ; InterPro IPR006975; KEGG: mmt:Metme_1627 NifQ family protein; PFAM: NifQ; SPTR: NifQ family protein.
 
  0.909
EIJ36894.1
Fe-S cluster assembly protein NifU; PFAM: NifU-like N terminal domain; BFD-like [2Fe-2S] binding domain; NifU-like domain; TIGRFAM: Fe-S cluster assembly protein NifU; COGs: COG0822 NifU homolog involved in Fe-S cluster formation; InterPro IPR002871:IPR007419:IPR001075:IPR010238; KEGG: alv:Alvin_1402 Fe-S cluster assembly protein NifU; PFAM: NIF system FeS cluster assembly, NifU, N-terminal; BFD-like [2Fe-2S]-binding region; NIF system FeS cluster assembly, NifU, C-terminal; SPTR: Fe-S cluster assembly protein NifU; TIGRFAM: NIF system FeS cluster assembly, NifU.
 
 0.900
EIJ33435.1
Flavodoxin/nitric oxide synthase; PFAM: Flavodoxin; Metallo-beta-lactamase superfamily; COGs: COG0426 flavoprotein; InterPro IPR008254; KEGG: mmt:Metme_1624 flavodoxin/nitric oxide synthase; PFAM: Flavodoxin/nitric oxide synthase; SPTR: Flavodoxin/nitric oxide synthase.
 
    0.898
EIJ33206.1
PFAM: Pyridine nucleotide-disulphide oxidoreductase; COGs: COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductase; InterPro IPR001450:IPR013027; KEGG: mgm:Mmc1_2205 oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; SPTR: FAD-dependent pyridine nucleotide-disulfide oxidoreductase.
   
 0.863
EIJ36526.1
KEGG: alv:Alvin_3045 hypothetical protein; SPTR: Putative uncharacterized protein.
  
    0.816
EIJ36893.1
Cysteine desulfurase NifS; PFAM: Aminotransferase class-V; TIGRFAM: cysteine desulfurase NifS; COGs: COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase; InterPro IPR000192:IPR017772; KEGG: alv:Alvin_1401 cysteine desulfurase NifS; PFAM: Aminotransferase, class V/Cysteine desulfurase; SPTR: Cysteine desulfurase NifS; TIGRFAM: Cysteine desulfurase, NifS, bacterial/archaeal.
  
  0.780
EIJ33537.1
PFAM: GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase; TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; COGs: COG0108 3 4-dihydroxy-2-butanone 4-phosphate synthase; HAMAP: 3,4-dihydroxy-2-butanone 4-phosphate synthase; InterPro IPR000422:IPR000926; KEGG: tgr:Tgr7_1561 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: DHBP synthase RibB; GTP cyclohydrolase II; SPTR: 3,4-dihydroxy-2-butanone 4-phosphate synthase; TIGRFAM: DHBP synthase RibB.
  
 
 0.777
EIJ36632.1
Fumarase, class I, homodimeric; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
    
 0.754
EIJ36521.1
PFAM: Protein of unknown function (DUF683); InterPro IPR007774; KEGG: alv:Alvin_0907 hypothetical protein; PFAM: Uncharacterised protein family UPF0437; SPTR: Putative uncharacterized protein.
  
     0.752
Your Current Organism:
Thiothrix nivea
NCBI taxonomy Id: 870187
Other names: T. nivea DSM 5205, Thiothrix nivea DSM 5205, Thiothrix nivea JP2, Thiothrix nivea str. DSM 5205, Thiothrix nivea strain DSM 5205
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