STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIJ33439.1PFAM: Rhodopirellula transposase; InterPro IPR011518; KEGG: amr:AM1_A0239 hypothetical protein; PFAM: Transposase, Rhodopirellula-type; SPTR: Putative uncharacterized protein; manually curated. (408 aa)    
Predicted Functional Partners:
EIJ33982.1
Hypothetical protein; PFAM: Integrase core domain; COGs: COG3415 Transposase and inactivated derivatives; KEGG: mar:MAE_58430 transposase; SPTR: Similar to tr|Q64CQ7|Q64CQ7; manually curated.
  
    0.436
EIJ36832.1
PFAM: Transposase IS66 family; InterPro IPR004291; KEGG: app:CAP2UW1_0910 transposase IS66; PFAM: Transposase, IS66; SPTR: Transposase IS66.
  
     0.434
EIJ35177.1
PFAM: Transposase IS66 family; InterPro IPR004291; KEGG: app:CAP2UW1_4668 hypothetical protein; PFAM: Transposase, IS66; SPTR: Putative uncharacterized protein.
  
     0.427
Your Current Organism:
Thiothrix nivea
NCBI taxonomy Id: 870187
Other names: T. nivea DSM 5205, Thiothrix nivea DSM 5205, Thiothrix nivea JP2, Thiothrix nivea str. DSM 5205, Thiothrix nivea strain DSM 5205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.