Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EIJ33504.1Protein of unknown function DUF2189, transmembrane; PFAM: Predicted integral membrane protein (DUF2189); COGs: COG5473 integral membrane protein; InterPro IPR018692; KEGG: tmz:Tmz1t_1482 hypothetical protein; PFAM: Protein of unknown function DUF2189, transmembrane; SPTR: Putative uncharacterized protein. (339 aa)    
Predicted Functional Partners:
EIJ33505.1
PFAM: Cytochrome C and Quinol oxidase polypeptide I; KEGG: adn:Alide_3614 cytochrome c oxidase, subunit I; SPTR: Putative cytochrome c oxidase, subunit I.
 
     0.799
EIJ33503.1
KEGG: tbd:Tbd_0985 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.512
EIJ35953.1
RNase HII; PFAM: Protein of unknown function (DUF3025); KEGG: psm:PSM_A1600 hypothetical protein; SPTR: Putative transmembrane protein.
  
     0.495
EIJ35193.1
PFAM: Bacterial type II secretion system protein N; InterPro IPR000645; KEGG: vcj:VCD_001644 general secretion pathway protein N; PFAM: Type II secretion system protein N; SPTR: General secretion pathway protein N.
  
     0.432
EIJ33246.1
KEGG: hse:Hsero_1059 hypothetical protein; SPTR: Isomerase.
  
     0.404
Your Current Organism:
Thiothrix nivea
NCBI taxonomy Id: 870187
Other names: T. nivea DSM 5205, Thiothrix nivea DSM 5205, Thiothrix nivea JP2, Thiothrix nivea str. DSM 5205, Thiothrix nivea strain DSM 5205
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