STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIJ33534.1Hypothetical protein. (54 aa)    
Predicted Functional Partners:
EIJ33535.1
NusB antitermination factor; PFAM: NusB family; TIGRFAM: transcription antitermination factor NusB; COGs: COG0781 Transcription termination factor; HAMAP: N utilization substance protein B-like protein; InterPro IPR011605:IPR006027; KEGG: tgr:Tgr7_1563 NusB antitermination factor; PFAM: NusB/RsmB/TIM44; SPTR: N utilization substance protein B homolog; TIGRFAM: NusB antitermination factor.
       0.492
EIJ33536.1
PFAM: 6,7-dimethyl-8-ribityllumazine synthase; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; COGs: COG0054 Riboflavin synthase beta-chain; HAMAP: 6,7-dimethyl-8-ribityllumazine synthase; InterPro IPR002180; KEGG: cps:CPS_1531 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 6,7-dimethyl-8-ribityllumazine synthase; SPTR: 6,7-dimethyl-8-ribityllumazine synthase; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase.
       0.492
EIJ33537.1
PFAM: GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase; TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; COGs: COG0108 3 4-dihydroxy-2-butanone 4-phosphate synthase; HAMAP: 3,4-dihydroxy-2-butanone 4-phosphate synthase; InterPro IPR000422:IPR000926; KEGG: tgr:Tgr7_1561 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: DHBP synthase RibB; GTP cyclohydrolase II; SPTR: 3,4-dihydroxy-2-butanone 4-phosphate synthase; TIGRFAM: DHBP synthase RibB.
       0.408
EIJ33538.1
PFAM: Lumazine binding domain; TIGRFAM: riboflavin synthase, alpha subunit; COGs: COG0307 Riboflavin synthase alpha chain; InterPro IPR001783; KEGG: pen:PSEEN0589 riboflavin synthase subunit alpha; PFAM: Lumazine-binding protein; SPTR: Riboflavin synthase alpha chain; TIGRFAM: Lumazine-binding protein.
       0.408
Your Current Organism:
Thiothrix nivea
NCBI taxonomy Id: 870187
Other names: T. nivea DSM 5205, Thiothrix nivea DSM 5205, Thiothrix nivea JP2, Thiothrix nivea str. DSM 5205, Thiothrix nivea strain DSM 5205
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