Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EIJ33600.1PFAM: Plasmid stabilisation system protein; InterPro IPR007712; KEGG: hde:HDEF_0951 addiction module; PFAM: Plasmid stabilisation system; SPTR: Addiction module. (106 aa)    
Predicted Functional Partners:
EIJ33601.1
CopG-like domain-containing protein DNA-binding; PFAM: Ribbon-helix-helix protein, copG family; InterPro IPR002145; KEGG: rlg:Rleg_6360 transcriptional regulator, CopG family; PFAM: CopG-like DNA-binding; SPTR: Putative uncharacterized protein XOO2590.
 
   0.987
EIJ37068.1
Transcriptional regulator, CopG family; COGs: COG3905 transcriptional regulator protein; KEGG: xom:XOO_2590 hypothetical protein; SPTR: Helix-turn-helix protein, CopG.
 
   0.949
EIJ37023.1
PFAM: Uncharacterised protein family (UPF0156); TIGRFAM: putative addiction module antidote protein, CC2985 family; InterPro IPR005360; KEGG: rsq:Rsph17025_4222 hypothetical protein; PFAM: Putative addiction module antidote protein, CC2985; SPTR: Putative uncharacterized protein; TIGRFAM: Putative addiction module antidote protein, CC2985.
 
 
 0.849
EIJ36395.1
PFAM: Ribbon-helix-helix protein, copG family; KEGG: gvi:gsr3527 hypothetical protein; SPTR: Gsr3527 protein.
  
   0.726
EIJ34546.1
PFAM: RelB antitoxin; TIGRFAM: addiction module antitoxin, RelB/DinJ family; COGs: COG3077 DNA-damage-inducible protein J; InterPro IPR007337; KEGG: dhd:Dhaf_3445 addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; SPTR: Toxin-antitoxin system, antitoxin component, ribbon-helix-helix domain protein; TIGRFAM: RelB antitoxin.
   
   0.683
EIJ33602.1
PFAM: Cobalamin synthesis protein cobW C-terminal domain; CobW/HypB/UreG, nucleotide-binding domain; COGs: COG0523 Putative GTPase (G3E family); InterPro IPR003495:IPR011629; KEGG: csa:Csal_0192 cobalamin synthesis protein, P47K; PFAM: Cobalamin (vitamin B12) biosynthesis CobW-like; Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal; SPTR: Cobalamin synthesis protein, P47K.
       0.494
EIJ33603.1
Transcriptional regulator, TraR/DksA family; PFAM: Prokaryotic dksA/traR C4-type zinc finger; TIGRFAM: RNA polymerase-binding protein DksA; COGs: COG1734 DnaK suppressor protein; InterPro IPR000962:IPR012784; KEGG: bav:BAV0144 DnaK suppressor protein; SPTR: Putative dnaK suppressor protein; TIGRFAM: RNA polymerase-binding, DksA; manually curated.
       0.494
EIJ33604.1
PFAM: Phosphoribosyl-AMP cyclohydrolase; COGs: COG0139 Phosphoribosyl-AMP cyclohydrolase; HAMAP: Phosphoribosyl-AMP cyclohydrolase; InterPro IPR002496; KEGG: hch:HCH_10001 phosphoribosyl-AMP cyclohydrolase; PFAM: Phosphoribosyl-AMP cyclohydrolase; SPTR: Phosphoribosyl-AMP cyclohydrolase.
       0.494
EIJ33605.1
Putative lipoprotein; PFAM: Protein of unknown function (DUF3299); COGs: COG3495 conserved hypothetical protein; KEGG: hne:HNE_0188 putative lipoprotein; SPTR: Uncharacterized conserved secreted protein.
       0.494
Your Current Organism:
Thiothrix nivea
NCBI taxonomy Id: 870187
Other names: T. nivea DSM 5205, Thiothrix nivea DSM 5205, Thiothrix nivea JP2, Thiothrix nivea str. DSM 5205, Thiothrix nivea strain DSM 5205
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