STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIJ34166.1KEGG: cyn:Cyan7425_4772 hypothetical protein; SPTR: Putative uncharacterized protein. (231 aa)    
Predicted Functional Partners:
secY
Preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.
   
 0.968
EIJ34054.1
PFAM: Preprotein translocase SecG subunit; TIGRFAM: protein translocase, SecG subunit; COGs: COG1314 Preprotein translocase subunit SecG; InterPro IPR004692; KEGG: tkm:TK90_0707 preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; SPTR: Preprotein translocase, SecG subunit; TIGRFAM: Preprotein translocase SecG subunit.
    
 0.964
EIJ34584.1
PFAM: Preprotein translocase subunit SecB; TIGRFAM: protein-export chaperone SecB; COGs: COG1952 Preprotein translocase subunit SecB; HAMAP: Bacterial protein export chaperone SecB; InterPro IPR003708; KEGG: shm:Shewmr7_0045 preprotein translocase subunit SecB; PFAM: Bacterial protein export chaperone SecB; SPTR: Protein-export protein secB; TIGRFAM: Bacterial protein export chaperone SecB.
   
 0.963
EIJ35814.1
PFAM: SecE/Sec61-gamma subunits of protein translocation complex; Uncharacterised protein family (UPF0104); TIGRFAM: preprotein translocase, SecE subunit, bacterial; InterPro IPR001901:IPR005807; KEGG: tgr:Tgr7_2337 preprotein translocase subunit SecE; PFAM: Protein secE/sec61-gamma protein; SPTR: Preprotein translocase subunit SecE; TIGRFAM: SecE subunit of protein translocation complex.
    
 0.953
EIJ36456.1
Hypothetical protein; PFAM: OmpA-like transmembrane domain; InterPro IPR000498; KEGG: cja:CJA_1293 outer membrane protein A; SPTR: Outer membrane protein A.
    
 
 0.892
EIJ35829.1
PFAM: Ribosomal protein L23; COGs: COG0089 Ribosomal protein L23; InterPro IPR013025; KEGG: cvi:CV_4184 50S ribosomal protein L23; PFAM: Ribosomal protein L25/L23; SPTR: 50S ribosomal protein L23.
    
   0.869
EIJ35835.1
PFAM: Ribosomal L29 protein; TIGRFAM: ribosomal protein L29; InterPro IPR001854; KEGG: tgr:Tgr7_2316 50S ribosomal protein L29; PFAM: Ribosomal protein L29; SPTR: Ribosomal protein L29; TIGRFAM: Ribosomal protein L29.
    
   0.868
EIJ33464.1
COGs: COG1426 conserved hypothetical protein; KEGG: pfl:PFL_4955 hypothetical protein; SPTR: Putative uncharacterized protein.
   
   0.836
EIJ35863.1
PFAM: Protein of unknown function (DUF2914); KEGG: tgr:Tgr7_0597 hypothetical protein; SPTR: Putative uncharacterized protein.
   
   0.836
EIJ33717.1
PFAM: Ribosomal L25p family; TIGRFAM: ribosomal protein L25, Ctc-form; COGs: COG1825 Ribosomal protein L25 (general stress protein Ctc); HAMAP: Ribosomal protein L25; InterPro IPR020055:IPR001021; KEGG: maq:Maqu_2366 50S ribosomal protein L25/general stress protein Ctc; PFAM: Ribosomal protein L25, N-terminal; SPTR: 50S ribosomal protein L25; TIGRFAM: Ribosomal protein L25.
   
 
 0.823
Your Current Organism:
Thiothrix nivea
NCBI taxonomy Id: 870187
Other names: T. nivea DSM 5205, Thiothrix nivea DSM 5205, Thiothrix nivea JP2, Thiothrix nivea str. DSM 5205, Thiothrix nivea strain DSM 5205
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