Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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EIJ34291.1Type IV pilin structural subunit; PFAM: Prokaryotic N-terminal methylation motif; Pilin (bacterial filament); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain; COGs: COG4969 Tfp pilus assembly protein major pilin PilA; InterPro IPR012902; KEGG: pau:PA14_58730 type IV pilin structural subunit; SPTR: General secretion pathway protein H. (180 aa)    
Predicted Functional Partners:
EIJ33726.1
Pilus assembly protein; PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain; COGs: COG4968 Tfp pilus assembly protein PilE; InterPro IPR012902; KEGG: tbd:Tbd_1865 pilus assembly protein; SPTR: Type 4 fimbrial biogenesis protein PilE.
 
  
 0.807
EIJ33978.1
Type IV pilus secretin PilQ; PFAM: Bacterial type II/III secretion system short domain; Secretin and TonB N terminus short domain; Bacterial type II and III secretion system protein; TIGRFAM: type IV pilus secretin (or competence protein) PilQ; COGs: COG4796 Type II secretory pathway component HofQ; InterPro IPR013355:IPR011662:IPR005644:IPR004846; KEGG: nhl:Nhal_3887 type IV pilus secretin PilQ; PFAM: Type II/III secretion system; NolW-like; Secretin/TonB, short N-terminal; SPTR: Type IV pilus secretin PilQ; TIGRFAM: Type IV pilus secretin PilQ.
  
   
 0.770
EIJ35686.1
General secretion pathway protein J; PFAM: Prokaryotic N-terminal methylation motif; Pseudopilin GspJ; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain; general secretion pathway protein J; COGs: COG4795 Type II secretory pathway component PulJ; InterPro IPR012902:IPR010055; KEGG: pmy:Pmen_2920 general secretion pathway protein J; SPTR: Outer membrane secretion protein W; TIGRFAM: General secretion pathway protein J; Prepilin-type cleavage/methylation, N-terminal.
   
 0.713
EIJ35961.1
General secretion pathway protein J; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain; InterPro IPR012902; KEGG: nhl:Nhal_3653 general secretion pathway protein J; SPTR: General secretion pathway protein J.
   
 0.713
EIJ35196.1
PFAM: General secretion pathway protein K; COGs: COG3156 Type II secretory pathway component PulK; InterPro IPR005628; KEGG: pmy:Pmen_2919 general secretion pathway protein K; SPTR: General secretion pathway protein K.
   
 
 0.659
EIJ35962.1
PFAM: General secretion pathway protein K; COGs: COG3156 Type II secretory pathway component PulK; InterPro IPR005628; KEGG: nhl:Nhal_3652 general secretion pathway protein K; SPTR: General secretion pathway protein K.
   
 
 0.659
EIJ34292.1
KEGG: acd:AOLE_01550 type IV pilin accessory protein; SPTR: Type IV pilin accessory protein.
       0.650
EIJ34343.1
PFAM: Bacterial type II secretion system protein F domain; COGs: COG1459 Type II secretory pathway component PulF; InterPro IPR018076; KEGG: tkm:TK90_2185 type II secretion system F domain protein; PFAM: Type II secretion system F domain; SPTR: Type II secretion system F domain protein.
 
    0.614
EIJ33975.1
PFAM: Fimbrial assembly protein (PilN); COGs: COG3166 Tfp pilus assembly protein PilN; InterPro IPR007813; KEGG: tkm:TK90_0276 fimbrial assembly family protein; PFAM: Fimbrial assembly; SPTR: Fimbrial assembly family protein.
 
  
 0.610
EIJ34344.1
PFAM: Bacterial Peptidase A24 N-terminal domain; Type IV leader peptidase family; COGs: COG1989 Type II secretory pathway prepilin signal peptidase PulO and related peptidase; InterPro IPR010627:IPR000045; KEGG: tgr:Tgr7_0785 type IV pilus prepilin peptidase PilD; PFAM: Peptidase A24A, N-terminal; Peptidase A24A, prepilin type IV; SPTR: Type IV pilus prepilin peptidase PilD.
 
  
 0.588
Your Current Organism:
Thiothrix nivea
NCBI taxonomy Id: 870187
Other names: T. nivea DSM 5205, Thiothrix nivea DSM 5205, Thiothrix nivea JP2, Thiothrix nivea str. DSM 5205, Thiothrix nivea strain DSM 5205
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