STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIJ34484.1PFAM: N-6 DNA Methylase; HsdM N-terminal domain; TIGRFAM: type I restriction system adenine methylase (hsdM); COGs: COG0286 Type I restriction-modification system methyltransferase subunit; InterPro IPR003356:IPR004546; KEGG: ttu:TERTU_2390 type I restriction-modification system, M subunit; PFAM: DNA methylase, adenine-specific; SPTR: Type I restriction-modification system, M subunit; TIGRFAM: Restriction endonuclease, type I, EcoRI, M subunit. (536 aa)    
Predicted Functional Partners:
EIJ34488.1
PFAM: Type I restriction modification DNA specificity domain; COGs: COG0732 Restriction endonuclease S subunits; InterPro IPR000055; KEGG: ser:SERP2471 type I restriction-modification system S subunit; PFAM: Restriction endonuclease, type I, S subunit, EcoBI; SPTR: Putative uncharacterized protein.
 
 
 0.989
EIJ34490.1
PFAM: Type I restriction enzyme R protein N terminus (HSDR_N); Type I restriction and modification enzyme - subunit R C terminal; Type III restriction enzyme, res subunit; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; COGs: COG0610 Type I site-specific restriction-modification system R (restriction) subunit and related helicase; InterPro IPR007409:IPR006935:IPR014001:IPR004473; KEGG: ttu:TERTU_2393 type I site-specific deoxyribonuclease, HsdR; PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; Restriction endonuclease, type I, EcoRI, R subunit/Type [...]
 
 
 0.971
EIJ35176.1
PFAM: Type I restriction modification DNA specificity domain; COGs: COG0732 Restriction endonuclease S subunits; InterPro IPR000055; KEGG: ddc:Dd586_0398 restriction modification system DNA specificity domain-containing protein; PFAM: Restriction endonuclease, type I, S subunit, EcoBI; SPTR: Restriction modification system DNA specificity domain protein.
 
 
 0.960
EIJ35184.1
PFAM: Type I restriction enzyme R protein N terminus (HSDR_N); Type III restriction enzyme, res subunit; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; COGs: COG0610 Type I site-specific restriction-modification system R (restriction) subunit and related helicase; InterPro IPR014001:IPR007409:IPR006935:IPR004473; KEGG: ddc:Dd586_0400 type I site-specific deoxyribonuclease, HsdR family; PFAM: Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; SMART: DEAD-like helicase, N- [...]
 
 
 0.947
EIJ35409.1
PFAM: Type I restriction modification DNA specificity domain; COGs: COG0732 Restriction endonuclease S subunits; InterPro IPR000055; KEGG: ecq:ECED1_5212 type I restriction enzyme EcoAI specificity protein (S protein) (S.EcoAI); PFAM: Restriction endonuclease, type I, S subunit, EcoBI; SPTR: Type I restriction enzyme EcoAI specificity protein (S protein) (S.EcoAI).
 
 
 0.921
EIJ34430.1
PFAM: Type I restriction modification DNA specificity domain; COGs: COG0732 Restriction endonuclease S subunits; InterPro IPR000055; KEGG: dze:Dd1591_4252 restriction modification system DNA specificity domain-containing protein; PFAM: Restriction endonuclease, type I, S subunit, EcoBI; SPTR: Type I restriction-modification system, S subunit.
  
 
 0.872
EIJ35172.1
Hypothetical protein; PFAM: Type I restriction modification DNA specificity domain; KEGG: apt:APA01_42410 hypothetical protein; SPTR: Putative uncharacterized protein.
 
   0.868
EIJ34432.1
PFAM: Type I restriction enzyme R protein N terminus (HSDR_N); Type III restriction enzyme, res subunit; COGs: COG0610 Type I site-specific restriction-modification system R (restriction) subunit and related helicase; InterPro IPR014001:IPR007409:IPR006935; KEGG: sgy:Sgly_0848 type III restriction protein res subunit; PFAM: Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; SMART: DEAD-like helicase, N-terminal; SPTR: DEAD/DEAH box helicase.
 
 
 0.814
EIJ34519.1
PFAM: Type I restriction modification DNA specificity domain; InterPro IPR000055; KEGG: mem:Memar_1093 restriction modification system DNA specificity subunit; PFAM: Restriction endonuclease, type I, S subunit, EcoBI; SPTR: Type I site-specific deoxyribonuclease.
   
   0.777
EIJ34485.1
PFAM: Protein of unknown function DUF86; COGs: COG2361 conserved hypothetical protein; InterPro IPR008201; KEGG: cya:CYA_0899 hypothetical protein; PFAM: Protein of unknown function DUF86; SPTR: Putative uncharacterized protein.
       0.773
Your Current Organism:
Thiothrix nivea
NCBI taxonomy Id: 870187
Other names: T. nivea DSM 5205, Thiothrix nivea DSM 5205, Thiothrix nivea JP2, Thiothrix nivea str. DSM 5205, Thiothrix nivea strain DSM 5205
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