Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EIJ34542.1PFAM: Sigma-54 interaction domain; Regulator of RNA terminal phosphate cyclase; COGs: COG4650 Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain; InterPro IPR009715:IPR002078:IPR003593; KEGG: ttu:TERTU_2563 transcriptional regulatory protein RtcR; PFAM: Regulator of RNA terminal phosphate cyclase; RNA polymerase sigma factor 54, interaction; SMART: ATPase, AAA+ type, core; SPTR: Transcriptional regulatory protein RtcR. (532 aa)    
Predicted Functional Partners:
EIJ34544.1
Protein of unknown function UPF0027; PFAM: Uncharacterized protein family UPF0027; COGs: COG1690 conserved hypothetical protein; InterPro IPR001233; KEGG: mmt:Metme_3305 hypothetical protein; PFAM: Uncharacterised protein family UPF0027; SPTR: RtcB protein.
 
  
 0.893
EIJ35306.1
Protein of unknown function UPF0027; PFAM: Uncharacterized protein family UPF0027; COGs: COG1690 conserved hypothetical protein; InterPro IPR001233; KEGG: prw:PsycPRwf_0858 hypothetical protein; PFAM: Uncharacterised protein family UPF0027; SPTR: Putative uncharacterized protein.
 
  
 0.795
EIJ34543.1
PFAM: MltA-interacting protein MipA; COGs: COG3713 Outer membrane protein V; InterPro IPR010583; KEGG: hch:HCH_04097 outer membrane protein V; PFAM: MltA-interacting MipA; SPTR: Outer membrane protein V.
       0.773
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
       0.608
EIJ33828.1
RNA polymerase, sigma 54 subunit, RpoN/SigL; PFAM: Sigma-54 factor, Activator interacting domain (AID); Sigma-54 factor, core binding domain; Sigma-54, DNA binding domain; TIGRFAM: RNA polymerase sigma-54 factor; COGs: COG1508 DNA-directed RNA polymerase specialized sigma subunit sigma54 homolog; InterPro IPR000394:IPR007046:IPR007634; KEGG: tgr:Tgr7_0726 RNA polymerase factor sigma-54; PFAM: RNA polymerase sigma factor 54, DNA-binding; RNA polymerase sigma factor 54, core-binding; RNA polymerase sigma factor 54; SPTR: RNA polymerase factor sigma-54; TIGRFAM: RNA polymerase sigma factor 54.
  
     0.522
EIJ34628.1
PFAM: SPFH domain / Band 7 family; COGs: COG2268 conserved hypothetical protein; InterPro IPR001107; KEGG: swi:Swit_0005 band 7 protein; PFAM: Band 7 protein; SMART: Band 7 protein; SPTR: Putative uncharacterized protein.
  
     0.402
Your Current Organism:
Thiothrix nivea
NCBI taxonomy Id: 870187
Other names: T. nivea DSM 5205, Thiothrix nivea DSM 5205, Thiothrix nivea JP2, Thiothrix nivea str. DSM 5205, Thiothrix nivea strain DSM 5205
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