STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIJ34543.1PFAM: MltA-interacting protein MipA; COGs: COG3713 Outer membrane protein V; InterPro IPR010583; KEGG: hch:HCH_04097 outer membrane protein V; PFAM: MltA-interacting MipA; SPTR: Outer membrane protein V. (242 aa)    
Predicted Functional Partners:
EIJ34542.1
PFAM: Sigma-54 interaction domain; Regulator of RNA terminal phosphate cyclase; COGs: COG4650 Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain; InterPro IPR009715:IPR002078:IPR003593; KEGG: ttu:TERTU_2563 transcriptional regulatory protein RtcR; PFAM: Regulator of RNA terminal phosphate cyclase; RNA polymerase sigma factor 54, interaction; SMART: ATPase, AAA+ type, core; SPTR: Transcriptional regulatory protein RtcR.
       0.773
EIJ34141.1
KEGG: cly:Celly_0085 hypothetical protein; SPTR: Conserved repeat domain protein.
  
     0.665
EIJ32790.1
PFAM: Cna protein B-type domain; Proprotein convertase P-domain; InterPro IPR002884:IPR008454:IPR002126:IPR006626; KEGG: hau:Haur_1649 Cna B domain-containing protein; PFAM: Collagen-binding surface protein Cna-like, B region; Proprotein convertase, P; Cadherin; SMART: Cadherin; Parallel beta-helix repeat; SPTR: Cna B domain protein.
  
     0.623
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
       0.608
EIJ32791.1
PFAM: Cna protein B-type domain; InterPro IPR008454:IPR002126:IPR006626; KEGG: hhy:Halhy_1831 Cadherin repeat-containing protein; PFAM: Collagen-binding surface protein Cna-like, B region; Cadherin; SPTR: Cadherin repeat protein.
  
     0.589
EIJ33954.1
Sporulation domain-containing protein; PFAM: Sporulation related domain; InterPro IPR007730; KEGG: bpt:Bpet2162 hypothetical protein; PFAM: Sporulation/cell division region, bacteria; SPTR: Putative uncharacterized protein.
  
     0.571
EIJ36341.1
KEGG: ava:Ava_3743 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.564
EIJ33892.1
KEGG: hhy:Halhy_3307 hypothetical protein; SPTR: Peptidase families S8 and S53 domain protein.
  
     0.558
EIJ35764.1
Hypothetical protein; KEGG: pjd:Pjdr2_0339 transglutaminase; SPTR: Putative uncharacterized protein.
  
     0.537
EIJ33056.1
PFAM: Bacterial protein of unknown function (DUF945); COGs: COG5339 conserved hypothetical protein; InterPro IPR010352; KEGG: esc:Entcl_2211 hypothetical protein; PFAM: Protein of unknown function DUF945, bacterial; SPTR: Putative uncharacterized protein.
  
    0.528
Your Current Organism:
Thiothrix nivea
NCBI taxonomy Id: 870187
Other names: T. nivea DSM 5205, Thiothrix nivea DSM 5205, Thiothrix nivea JP2, Thiothrix nivea str. DSM 5205, Thiothrix nivea strain DSM 5205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.