STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIJ34556.1Protein of unknown function DUF107; PFAM: NfeD-like; COGs: COG1030 Membrane-bound serine protease (ClpP class); InterPro IPR002810; KEGG: tgr:Tgr7_2129 hypothetical protein; PFAM: Nodulation efficiency, NfeD; SPTR: Putative uncharacterized protein. (444 aa)    
Predicted Functional Partners:
EIJ34557.1
PFAM: SPFH domain / Band 7 family; COGs: COG0330 Membrane protease subunits stomatin/prohibitin homologs; InterPro IPR001107; KEGG: csa:Csal_2766 SPFH domain-containing protein/band 7 family protein; PFAM: Band 7 protein; SMART: Band 7 protein; SPTR: SPFH domain, Band 7 family protein.
 
    0.960
EIJ34558.1
KEGG: dar:Daro_3465 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.636
EIJ34554.1
Two component transcriptional regulator, winged helix family; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: bra:BRADO3955 OmpR family two-component transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region; SPTR: Two-component transcriptional regulat [...]
       0.529
EIJ34555.1
Integral membrane sensor signal transduction histidine kinase; PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003660:IPR003661:IPR003594; KEGG: mci:Mesci_0924 ATP-binding region ATPase domain protein; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacc [...]
       0.529
EIJ34559.1
PFAM: Peptidase family M23; COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR016047; KEGG: gur:Gura_3990 peptidase M23B; PFAM: Peptidase M23; SPTR: Peptidase M23B.
       0.416
EIJ35305.1
Protein of unknown function DUF107; PFAM: NfeD-like; COGs: COG1585 Membrane protein implicated in regulation of membrane protease activity; InterPro IPR002810; KEGG: kko:Kkor_2297 hypothetical protein; PFAM: Nodulation efficiency, NfeD; SPTR: Putative uncharacterized protein.
   
  
 0.414
EIJ35758.1
Protein of unknown function DUF107; PFAM: NfeD-like; InterPro IPR002810; KEGG: atu:Atu3773 hypothetical protein; PFAM: Nodulation efficiency, NfeD; SPTR: Putative uncharacterized protein.
   
  
 0.414
EIJ34628.1
PFAM: SPFH domain / Band 7 family; COGs: COG2268 conserved hypothetical protein; InterPro IPR001107; KEGG: swi:Swit_0005 band 7 protein; PFAM: Band 7 protein; SMART: Band 7 protein; SPTR: Putative uncharacterized protein.
   
    0.407
Your Current Organism:
Thiothrix nivea
NCBI taxonomy Id: 870187
Other names: T. nivea DSM 5205, Thiothrix nivea DSM 5205, Thiothrix nivea JP2, Thiothrix nivea str. DSM 5205, Thiothrix nivea strain DSM 5205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.