STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIJ34559.1PFAM: Peptidase family M23; COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR016047; KEGG: gur:Gura_3990 peptidase M23B; PFAM: Peptidase M23; SPTR: Peptidase M23B. (190 aa)    
Predicted Functional Partners:
EIJ34555.1
Integral membrane sensor signal transduction histidine kinase; PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003660:IPR003661:IPR003594; KEGG: mci:Mesci_0924 ATP-binding region ATPase domain protein; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacc [...]
 
   
 0.577
EIJ34622.1
KEGG: del:DelCs14_4722 hypothetical protein; SPTR: Putative uncharacterized protein.
  
  
  0.501
EIJ34558.1
KEGG: dar:Daro_3465 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.493
EIJ35145.1
PFAM: Protein of unknown function (DUF3298); KEGG: amr:AM1_6347 hypothetical protein; SPTR: Putative uncharacterized protein.
  
 
   0.446
EIJ35763.1
PFAM: Surface presentation of antigens (SPOA); TIGRFAM: type III secretion system apparatus protein YscQ/HrcQ; COGs: COG1886 Flagellar motor switch/type III secretory pathway protein; InterPro IPR001543:IPR013385; KEGG: vha:VIBHAR_01727 type III secretion system protein; PFAM: Surface presentation of antigen (SpoA); SPTR: Type III secretion inner membrane protein YscQ; TIGRFAM: Type III secretion system apparatus protein YscQ/HrcQ.
  
   0.439
EIJ32950.1
PFAM: Endonuclease I; Endonuclease/Exonuclease/phosphatase family; COGs: COG2356 Endonuclease I; InterPro IPR005135:IPR007346; KEGG: swd:Swoo_0801 endonuclease/exonuclease/phosphatase; PFAM: Endonuclease I; Endonuclease/exonuclease/phosphatase; SPTR: Endonuclease/exonuclease/phosphatase.
  
     0.431
EIJ34505.1
PFAM: Inner membrane protein CreD; COGs: COG4452 Inner membrane protein involved in colicin E2 resistance; InterPro IPR010364; KEGG: pmk:MDS_4426 hypothetical protein; PFAM: Uncharacterised protein family, inner membrane CreD; SPTR: Inner membrane protein CreD.
  
     0.429
EIJ34556.1
Protein of unknown function DUF107; PFAM: NfeD-like; COGs: COG1030 Membrane-bound serine protease (ClpP class); InterPro IPR002810; KEGG: tgr:Tgr7_2129 hypothetical protein; PFAM: Nodulation efficiency, NfeD; SPTR: Putative uncharacterized protein.
       0.416
EIJ34557.1
PFAM: SPFH domain / Band 7 family; COGs: COG0330 Membrane protease subunits stomatin/prohibitin homologs; InterPro IPR001107; KEGG: csa:Csal_2766 SPFH domain-containing protein/band 7 family protein; PFAM: Band 7 protein; SMART: Band 7 protein; SPTR: SPFH domain, Band 7 family protein.
       0.416
EIJ33273.1
PFAM: Anti sigma-E protein RseA, N-terminal domain; InterPro IPR005572; KEGG: sde:Sde_2250 secretion protein HlyD; PFAM: Anti sigma-E protein RseA, N-terminal; SPTR: Anti sigma-E protein RseA-like protein.
  
     0.413
Your Current Organism:
Thiothrix nivea
NCBI taxonomy Id: 870187
Other names: T. nivea DSM 5205, Thiothrix nivea DSM 5205, Thiothrix nivea JP2, Thiothrix nivea str. DSM 5205, Thiothrix nivea strain DSM 5205
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