STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIJ34564.1PFAM: Transglycosylase SLT domain; COGs: COG0741 Soluble lytic murein transglycosylase and related regulatory protein (some contain LysM/invasin domains); InterPro IPR008258; KEGG: tgr:Tgr7_2404 lytic transglycosylase catalytic; PFAM: Lytic transglycosylase-like, catalytic; SPTR: Lytic transglycosylase catalytic. (296 aa)    
Predicted Functional Partners:
EIJ35756.1
Type III secretion system ATPase, FliI/YscN; PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: ATPase FliI/YscN family; type III secretion apparatus H+-transporting two-sector ATPase; COGs: COG1157 Flagellar biosynthesis/type III secretory pathway ATPase; InterProIPR004100:IPR000194:IPR005714:IPR013380:IPR 003593; KEGG: hch:HCH_05107 type III secretion system ATPase; PFAM: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; SMART: AT [...]
 
  
 0.570
EIJ34565.1
Hypothetical protein.
       0.547
EIJ34566.1
PFAM: Protein of unknown function (DUF525); COGs: COG2967 Uncharacterized protein affecting Mg2+/Co2+ transport; HAMAP: Protein ApaG; InterPro IPR007474; KEGG: tgr:Tgr7_2722 ApaG domain protein; PFAM: ApaG; SPTR: Protein ApaG.
       0.547
EIJ33733.1
OmpA/MotB domain protein; PFAM: OmpA family; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665; KEGG: cph:Cpha266_2107 OmpA/MotB domain-containing protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: OmpA/MotB domain protein.
  
     0.522
EIJ36014.1
CheA signal transduction histidine kinase; PFAM: CheW-like domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; Hpt domain; COGs: COG0643 Chemotaxis protein histidine kinase and related kinase; InterPro IPR008207:IPR003594:IPR002545:IPR001789; KEGG: sde:Sde_0519 putative CheA signal transduction histidine kinases; PFAM: Signal transduction response regulator, receiver region; ATP-binding region, ATPase-like; Signal transduction histidine kinase, phosphotransfer (Hpt) region; CheW-like protein; SMART: Signal transduction response regulator [...]
 
    0.495
EIJ34563.1
methylated-DNA/protein- cysteinemethyltransferase; PFAM: 6-O-methylguanine DNA methyltransferase, DNA binding domain; TIGRFAM: O-6-methylguanine DNA methyltransferase; COGs: COG0350 Methylated DNA-protein cysteine methyltransferase; InterPro IPR014048; KEGG: fbl:Fbal_3039 methylated-DNA/protein-cysteinemethyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; SPTR:Methylated-DNA/protein-cysteinemethyltransfera se; TIGRFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding.
       0.491
EIJ34918.1
OmpA/MotB domain protein; PFAM: OmpA family; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665; KEGG: dak:DaAHT2_0689 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: OmpA/MotB domain protein.
  
     0.467
EIJ36199.1
OmpA/MotB domain protein; PFAM: Rickettsia 17 kDa surface antigen; OmpA family; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR008816:IPR006665; KEGG: sml:Smlt1826 putative outer membrane lipoprotein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; Rickettsia 17kDa surface antigen; SPTR: Putative outer membrane lipoprotein.
  
     0.445
EIJ34570.1
PFAM: D12 class N6 adenine-specific DNA methyltransferase; TIGRFAM: DNA adenine methylase (dam); COGs: COG0338 Site-specific DNA methylase; InterPro IPR012327; KEGG: xfa:XF1804 site-specific DNA-methyltransferase; PFAM: D12 class N6 adenine-specific DNA methyltransferase; SPTR: DNA adenine methylase subfamily.
   
   0.440
EIJ36015.1
PFAM: HAMP domain; Methyl-accepting chemotaxis protein (MCP) signaling domain; COGs: COG0840 Methyl-accepting chemotaxis protein; InterPro IPR003660:IPR004089; KEGG: hch:HCH_05831 methyl-accepting chemotaxis protein; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SPTR: Methyl-accepting chemotaxis protein.
  
    0.427
Your Current Organism:
Thiothrix nivea
NCBI taxonomy Id: 870187
Other names: T. nivea DSM 5205, Thiothrix nivea DSM 5205, Thiothrix nivea JP2, Thiothrix nivea str. DSM 5205, Thiothrix nivea strain DSM 5205
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