STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIJ34576.1PFAM: Rubrerythrin; COGs: COG1592 Rubrerythrin; InterPro IPR003251; KEGG: fbl:Fbal_1759 rubrerythrin; PFAM: Rubrerythrin; SPTR: Rubrerythrin. (139 aa)    
Predicted Functional Partners:
EIJ34574.1
PFAM: Protein of unknown function (DUF3501); KEGG: tkm:TK90_0421 hypothetical protein; SPTR: Putative uncharacterized protein.
 
   
 0.893
EIJ34575.1
Hypothetical protein; COGs: COG0247 Fe-S oxidoreductase; KEGG: tgr:Tgr7_0836 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.892
EIJ34577.1
PFAM: Protein of unknown function (DUF3530); KEGG: rma:Rmag_0376 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.529
EIJ33586.1
PFAM: C-terminal domain of 1-Cys peroxiredoxin; AhpC/TSA family; COGs: COG0450 Peroxiredoxin; HAMAP: peroxiredoxin; InterPro IPR000866:IPR019479; KEGG: swi:Swit_3743 1-Cys peroxiredoxin; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Peroxiredoxin, C-terminal; SPTR: Redoxin family protein.
  
  
 0.514
EIJ33660.1
PFAM: Pyridine nucleotide-disulphide oxidoreductase; Rubredoxin; COGs: COG1251 NAD(P)H-nitrite reductase; InterPro IPR004039:IPR013027; KEGG: hna:Hneap_2210 Rubredoxin-type Fe(Cys)4 protein; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Rubredoxin-type Fe(Cys)4 protein; SPTR: Rubredoxin-type Fe(Cys)4 protein.
  
  
 0.505
EIJ34633.1
Rubredoxin-type Fe(Cys)4 protein; PFAM: Rubredoxin; COGs: COG1773 Rubredoxin; InterPro IPR004039; KEGG: brh:RBRH_01484 Rubredoxin; PFAM: Rubredoxin-type Fe(Cys)4 protein; SPTR: Rubredoxin.
  
  
 0.505
EIJ34048.1
PFAM: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; Respiratory-chain NADH dehydrogenase 51 Kd subunit; SLBB domain; TIGRFAM: NADH-quinone oxidoreductase, F subunit; COGs: COG1894 NADH:ubiquinone oxidoreductase NADH-binding (51 kD) subunit; InterPro IPR011537:IPR011538:IPR019554:IPR019575; KEGG: tgr:Tgr7_0991 NADH-quinone oxidoreductase, F subunit; PFAM: NADH:ubiquinone oxidoreductase, 51kDa subunit; Soluble ligand binding domain; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; SPTR: NADH-quinone oxidoreductase, F subunit; TIGRFAM: NADH ubiquinone oxidor [...]
     
  0.455
EIJ34049.1
PFAM: Respiratory-chain NADH dehydrogenase 24 Kd subunit; TIGRFAM: NADH-quinone oxidoreductase, E subunit; COGs: COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit; InterPro IPR002023; KEGG: tkm:TK90_0712 NADH-quinone oxidoreductase, E subunit; PFAM: NADH:ubiquinone oxidoreductase, 24kDa subunit; SPTR: NADH-quinone oxidoreductase, E subunit; TIGRFAM: NADH:ubiquinone oxidoreductase, 24kDa subunit.
     
 0.452
EIJ33207.1
PFAM: Rubrerythrin; InterPro IPR003251; KEGG: mgm:Mmc1_2204 rubrerythrin; PFAM: Rubrerythrin; SPTR: Rubrerythrin.
  
  
 0.449
fur
PFAM: Ferric uptake regulator family; COGs: COG0735 Fe2+/Zn2+ uptake regulation protein; InterPro IPR002481; KEGG: maq:Maqu_3365 ferric uptake regulator family protein; PFAM: Ferric-uptake regulator; SPTR: DNA-binding transcriptional dual regulator of siderophore biosynthesis and transport of iron; Belongs to the Fur family.
  
  
 0.437
Your Current Organism:
Thiothrix nivea
NCBI taxonomy Id: 870187
Other names: T. nivea DSM 5205, Thiothrix nivea DSM 5205, Thiothrix nivea JP2, Thiothrix nivea str. DSM 5205, Thiothrix nivea strain DSM 5205
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