STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIJ34578.1NLP/P60 protein; PFAM: NlpC/P60 family; COGs: COG0791 Cell wall-associated hydrolase (invasion-associated protein); InterPro IPR000064; KEGG: axy:AXYL_01576 NlpC/P60 family protein 1; PFAM: NLP/P60; SPTR: NlpC/P60 family protein 1. (197 aa)    
Predicted Functional Partners:
EIJ34198.1
Cell division protein FtsX; PFAM: Predicted permease; COGs: COG2177 Cell division protein; InterPro IPR003838; KEGG: tgr:Tgr7_2990 hypothetical protein; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: Putative uncharacterized protein.
 
 
 
 0.747
EIJ34589.1
Carboxyl-terminal protease; PFAM: Peptidase family S41; PDZ domain (Also known as DHR or GLGF); TIGRFAM: C-terminal peptidase (prc); COGs: COG0793 Periplasmic protease; InterPro IPR001478:IPR005151:IPR004447; KEGG: nhl:Nhal_0021 carboxyl-terminal protease; PFAM: Peptidase S41; PDZ/DHR/GLGF; SMART: Peptidase S41; PDZ/DHR/GLGF; SPTR: C-terminal processing peptidase subfamily; TIGRFAM: Peptidase S41A, C-terminal protease.
    
 
 0.702
ftsE
Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.
  
 
 0.626
EIJ33473.1
PFAM: Peptidase family S41; InterPro IPR005151; KEGG: kfl:Kfla_2538 peptidase S41; PFAM: Peptidase S41; SPTR: Peptidase S41.
    
   0.563
EIJ35431.1
Hypothetical protein; KEGG: dme:Dmel_CG6296 CG6296 gene product from transcript CG6296-RA; SPTR: Putative uncharacterized protein.
    
   0.563
EIJ34579.1
PFAM: S-adenosylmethionine decarboxylase; TIGRFAM: S-adenosylmethionine decarboxylase proenzyme, Escherichia coli form; COGs: COG1586 S-adenosylmethionine decarboxylase; HAMAP: S-adenosylmethionine decarboxylase proenzyme; InterPro IPR003826:IPR009165; KEGG: tkm:TK90_2355 S-adenosylmethionine decarboxylase proenzyme; PFAM: S-adenosylmethionine decarboxylase, bacterial/archaeal; SPTR: S-adenosylmethionine decarboxylase proenzyme; TIGRFAM: S-adenosylmethionine decarboxylase, bacterial.
       0.401
Your Current Organism:
Thiothrix nivea
NCBI taxonomy Id: 870187
Other names: T. nivea DSM 5205, Thiothrix nivea DSM 5205, Thiothrix nivea JP2, Thiothrix nivea str. DSM 5205, Thiothrix nivea strain DSM 5205
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