STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIJ34588.1PFAM: Peptidase family M23; COGs: COG4942 Membrane-bound metallopeptidase; InterPro IPR016047; KEGG: pmk:MDS_4579 peptidase M23B; PFAM: Peptidase M23; SPTR: Peptidase M23B. (400 aa)    
Predicted Functional Partners:
EIJ34198.1
Cell division protein FtsX; PFAM: Predicted permease; COGs: COG2177 Cell division protein; InterPro IPR003838; KEGG: tgr:Tgr7_2990 hypothetical protein; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: Putative uncharacterized protein.
 
 
 
 0.989
EIJ35425.1
PFAM: CheB methylesterase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; CheR methyltransferase, SAM binding domain; His Kinase A (phosphoacceptor) domain; CheR methyltransferase, all-alpha domain; PAS fold; TIGRFAM: PAS domain S-box; COGs: COG1352 Methylase of chemotaxis methyl-accepting protein; InterProIPR000780:IPR003661:IPR003594:IPR000014:IPR 000673:IPR013767; KEGG: din:Selin_0964 ATPase ATP-binding domain-containing protein; PFAM: ATP-binding region, ATPase-like; Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase; MCP methyltransferas [...]
    
  0.939
EIJ35981.1
Methyltransferase type 11; PFAM: Methyltransferase domain; COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: pmh:P9215_04251 ubiquinone/menaquinone biosynthesis methylase; PFAM: Methyltransferase type 11; SPTR: Methylase involved in ubiquinone/menaquinone biosynthesis.
   
   0.892
EIJ34660.1
PFAM: Peptidase family M48; COGs: COG4783 Putative Zn-dependent protease contains TPR repeats; InterPro IPR001915; KEGG: tgr:Tgr7_2220 peptidase M48 Ste24p; PFAM: Peptidase M48, Ste24p; SPTR: Peptidase M48 Ste24p.
 
 
   0.868
EIJ34376.1
Hypothetical protein; KEGG: dao:Desac_2367 Adenylate cyclase; SPTR: Adenylate cyclase.
 
 
   0.857
EIJ34951.1
Hypothetical protein; KEGG: dao:Desac_2367 Adenylate cyclase; SPTR: Adenylate cyclase.
 
 
   0.856
EIJ36096.1
Hypothetical protein; KEGG: cps:CPS_4260 sensor histidine kinase/response regulator; SPTR: Sensor histidine kinase/response regulator.
    
  0.829
EIJ36015.1
PFAM: HAMP domain; Methyl-accepting chemotaxis protein (MCP) signaling domain; COGs: COG0840 Methyl-accepting chemotaxis protein; InterPro IPR003660:IPR004089; KEGG: hch:HCH_05831 methyl-accepting chemotaxis protein; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SPTR: Methyl-accepting chemotaxis protein.
   
 
  0.789
EIJ34821.1
Cell wall hydrolase/autolysin; PFAM: N-acetylmuramoyl-L-alanine amidase; Localisation of periplasmic protein complexes; COGs: COG0860 N-acetylmuramoyl-L-alanine amidase; InterPro IPR002508; KEGG: tkm:TK90_0493 N-acetylmuramoyl-L-alanine amidase; PFAM: Cell wall hydrolase/autolysin, catalytic; SMART: Cell wall hydrolase/autolysin, catalytic; SPTR: N-acetylmuramoyl-L-alanine amidase.
 
  
 0.771
EIJ34589.1
Carboxyl-terminal protease; PFAM: Peptidase family S41; PDZ domain (Also known as DHR or GLGF); TIGRFAM: C-terminal peptidase (prc); COGs: COG0793 Periplasmic protease; InterPro IPR001478:IPR005151:IPR004447; KEGG: nhl:Nhal_0021 carboxyl-terminal protease; PFAM: Peptidase S41; PDZ/DHR/GLGF; SMART: Peptidase S41; PDZ/DHR/GLGF; SPTR: C-terminal processing peptidase subfamily; TIGRFAM: Peptidase S41A, C-terminal protease.
 
    0.766
Your Current Organism:
Thiothrix nivea
NCBI taxonomy Id: 870187
Other names: T. nivea DSM 5205, Thiothrix nivea DSM 5205, Thiothrix nivea JP2, Thiothrix nivea str. DSM 5205, Thiothrix nivea strain DSM 5205
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