STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIJ34765.1KEGG: pph:Ppha_2628 hypothetical protein; SPTR: Putative uncharacterized protein. (241 aa)    
Predicted Functional Partners:
EIJ34766.1
ABC-1 domain-containing protein; PFAM: ABC1 family; COGs: COG0661 unusual protein kinase; InterPro IPR004147; KEGG: sde:Sde_3886 unusual protein kinase-like protein; PFAM: ABC-1; SPTR: ABC-1.
       0.523
EIJ34767.1
PFAM: Bacterial regulatory proteins, tetR family; COGs: COG1309 Transcriptional regulator; InterPro IPR001647; KEGG: sde:Sde_3885 TetR family transcriptional regulator; PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Regulatory protein, TetR.
       0.523
EIJ34763.1
Beta-lactamase hydrolase-family protein; PFAM: Putative phosphatase (DUF442); InterPro IPR005939; KEGG: cyc:PCC7424_4436 hypothetical protein; PFAM: Beta-lactamase hydrolase-like; SPTR: Putative uncharacterized protein.
       0.453
EIJ34764.1
PFAM: Aminotransferase class IV; TIGRFAM: D-amino acid aminotransferase; branched-chain amino acid aminotransferase, group I; COGs: COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; InterPro IPR001544:IPR005785; KEGG: mmt:Metme_2103 branched-chain amino acid aminotransferase; PFAM: Aminotransferase, class IV; SPTR: Branched chain amino acid aminotransferase; TIGRFAM: Branched-chain amino acid aminotransferase I.
       0.453
Your Current Organism:
Thiothrix nivea
NCBI taxonomy Id: 870187
Other names: T. nivea DSM 5205, Thiothrix nivea DSM 5205, Thiothrix nivea JP2, Thiothrix nivea str. DSM 5205, Thiothrix nivea strain DSM 5205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.