STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIJ35674.1PFAM: Cytochrome C assembly protein; TIGRFAM: cytochrome c-type biogenesis protein CcsB; COGs: COG0755 ABC-type transport system involved in cytochrome c biogenesis permease component; InterPro IPR017562:IPR002541; KEGG: tbd:Tbd_0185 putative transmembrane cytochrome c-type biogenesis transmembrane protein; PFAM: Cytochrome c assembly protein; SPTR: Putative transmembrane cytochrome C-type biogenesis transmembrane protein; TIGRFAM: Cytochrome c-type biogenesis protein CcsA. (392 aa)    
Predicted Functional Partners:
EIJ35675.1
PFAM: ResB-like family; COGs: COG1333 ResB protein required for cytochrome c biosynthesis; InterPro IPR007816; KEGG: tgr:Tgr7_0090 ResB family protein; PFAM: ResB-like; SPTR: ResB family protein.
 
  
 0.989
EIJ33853.1
PFAM: CcmB protein; TIGRFAM: heme exporter protein CcmB; COGs: COG2386 ABC-type transport system involved in cytochrome c biogenesis permease component; InterPro IPR003544; KEGG: mca:MCA0953 heme exporter protein CcmB; PFAM: Cytochrome c-type biogenesis protein CcmB; SPTR: Heme exporter protein CcmB; TIGRFAM: Cytochrome c-type biogenesis protein CcmB.
  
 0.981
EIJ33851.1
PFAM: Heme exporter protein D (CcmD); TIGRFAM: heme exporter protein CcmD; InterPro IPR007078; PFAM: Haem exporter protein D (CcmD); SPTR: Heme exporter protein CcmD; TIGRFAM: Haem exporter protein D (CcmD).
  
 
 0.976
EIJ33850.1
PFAM: CcmE; COGs: COG2332 Cytochrome c-type biogenesis protein CcmE; HAMAP: CcmE/CycJ protein; InterPro IPR004329; KEGG: nwa:Nwat_0812 CcmE/CycJ protein; PFAM: CcmE/CycJ protein; SPTR: Cytochrome c-type biogenesis protein CcmE.
  
 
 0.964
EIJ33854.1
PFAM: ABC transporter; TIGRFAM: heme ABC exporter, ATP-binding protein CcmA; COGs: COG4133 ABC-type transport system involved in cytochrome c biogenesis ATPase component; InterPro IPR003439:IPR005895:IPR003593; KEGG: mmt:Metme_2351 heme exporter protein CcmA; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: Putative heme exporter protein A; TIGRFAM: ABC transporter, haem export, CcmA.
  
 0.963
EIJ34039.1
PFAM: Protein of unknown function (DUF2818); KEGG: tgr:Tgr7_1000 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.773
EIJ35673.1
Hypothetical protein; PFAM: DSBA-like thioredoxin domain; KEGG: mme:Marme_3469 DSBA oxidoreductase; SPTR: Thiol:disulfide interchange protein DsbA; manually curated.
  
  
 0.603
EIJ35676.1
PFAM: Cytochrome c; COGs: COG2863 Cytochrome c553; InterPro IPR003088; KEGG: tgr:Tgr7_0089 cytochrome c class I; PFAM: Cytochrome c, class I; SPTR: Cytochrome c class I.
     
 0.582
EIJ33517.1
Redoxin domain protein; PFAM: AhpC/TSA family; InterPro IPR013740; KEGG: cvi:CV_4257 thioredoxin; PFAM: Redoxin; SPTR: Probable thioredoxin.
  
  
 0.556
EIJ35672.1
PFAM: Ubiquinone biosynthesis protein COQ7; COGs: COG2941 Ubiquinone biosynthesis protein COQ7; KEGG: alv:Alvin_0173 putative ubiquinone biosynthesis protein; SPTR:2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquino lhydroxylase.
       0.530
Your Current Organism:
Thiothrix nivea
NCBI taxonomy Id: 870187
Other names: T. nivea DSM 5205, Thiothrix nivea DSM 5205, Thiothrix nivea JP2, Thiothrix nivea str. DSM 5205, Thiothrix nivea strain DSM 5205
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