STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIJ35725.1PFAM: Bacteriophage replication gene A protein (GPA); InterPro IPR008766; KEGG: shm:Shewmr7_0712 bacteriophage replication gene A; PFAM: Replication endonuclease, probable, phage; SPTR: Bacteriophage replication gene A. (676 aa)    
Predicted Functional Partners:
EIJ35719.1
PFAM: Phage capsid scaffolding protein (GPO) serine peptidase; InterPro IPR009228; KEGG: rah:Rahaq_1478 capsid scaffolding; PFAM: Phage capsid scaffolding; SPTR: Capsid scaffolding.
  
    0.924
EIJ35717.1
PFAM: Phage major capsid protein, P2 family; TIGRFAM: phage major capsid protein, P2 family; InterPro IPR006441; KEGG: adn:Alide_1282 phage major capsid protein, p2 family; PFAM: Phage major capsid protein, P2; SPTR: Gp33; TIGRFAM: Phage major capsid protein, P2.
  
    0.905
EIJ35718.1
PFAM: Phage small terminase subunit; InterPro IPR010270; KEGG: bgl:bglu_1g01450 hypothetical protein; PFAM: Phage small terminase subunit; SPTR: Putative uncharacterized protein.
  
    0.901
EIJ33322.1
PFAM: Phage virion morphogenesis family; TIGRFAM: phage virion morphogenesis (putative tail completion) protein; COGs: COG5005 Mu-like prophage protein gpG; InterPro IPR006522; KEGG: nma:NMA1849 hypothetical protein; PFAM: Phage virion morphogenesis (putative tail completion) protein; SPTR: Phage virion morphogeneis protein; TIGRFAM: Phage virion morphogenesis (putative tail completion) protein.
   
    0.815
EIJ35721.1
Hypothetical protein.
       0.773
EIJ35722.1
PFAM: Prophage CP4-57 regulatory protein (AlpA); InterPro IPR010260; PFAM: Prophage CP4-57 regulatory.
       0.773
EIJ35723.1
Hypothetical protein.
       0.773
EIJ35724.1
Hypothetical protein.
       0.773
EIJ35726.1
Hypothetical protein.
       0.773
EIJ35727.1
Hypothetical protein.
       0.746
Your Current Organism:
Thiothrix nivea
NCBI taxonomy Id: 870187
Other names: T. nivea DSM 5205, Thiothrix nivea DSM 5205, Thiothrix nivea JP2, Thiothrix nivea str. DSM 5205, Thiothrix nivea strain DSM 5205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.