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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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EIJ35781.1Polynucleotide adenylyltransferase/metal dependent phosphohydrolase; PFAM: HD domain; Poly A polymerase head domain; COGs: COG0617 tRNA nucleotidyltransferase/poly(A) polymerase; HAMAP: Multifunctional CCA protein; InterPro IPR002646:IPR006674:IPR003607; KEGG: tgr:Tgr7_0331 tRNA nucleotidyltransferase; PFAM: Polynucleotide adenylyltransferase region; Metal-dependent phosphohydrolase, HD region, subdomain; SMART: Metal-dependent phosphohydrolase, HD region; SPTR: Multifunctional CCA protein. (447 aa)    
Predicted Functional Partners:
EIJ33447.1
PFAM: Dihydrodipicolinate reductase, N-terminus; Dihydrodipicolinate reductase, C-terminus; TIGRFAM: dihydrodipicolinate reductase; COGs: COG0289 Dihydrodipicolinate reductase; HAMAP: Dihydrodipicolinate reductase; InterPro IPR011770:IPR000846; KEGG: tgr:Tgr7_0974 dihydrodipicolinate reductase; PFAM: Dihydrodipicolinate reductase; SPTR: Dihydrodipicolinate reductase; TIGRFAM: Dihydrodipicolinate reductase, bacterial/plant.
  
    0.764
EIJ32762.1
Polyribonucleotide nucleotidyltransferase; PFAM: KH domain; S1 RNA binding domain; 3' exoribonuclease family, domain 1; Polyribonucleotide nucleotidyltransferase, RNA binding domain; 3' exoribonuclease family, domain 2; TIGRFAM: polyribonucleotide nucleotidyltransferase; COGs: COG1185 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase); HAMAP: Polyribonucleotide nucleotidyltransferase; InterProIPR012162:IPR001247:IPR015847:IPR015848:IPR 018111:IPR003029:IPR004087; KEGG: psu:Psesu_1825 polyribonucleotide nucleotidyltransferase; PFAM: Exoribonuclease, phosphorolytic [...]
  
 
 0.706
EIJ35941.1
PFAM: Biotin protein ligase C terminal domain; Biotin/lipoate A/B protein ligase family; TIGRFAM: birA, biotin-[acetyl-CoA-carboxylase] ligase region; COGs: COG0340 Biotin-(acetyl-CoA carboxylase) ligase; InterPro IPR004143:IPR004408; KEGG: asa:ASA_0271 biotin-(acetyl-CoA-carboxylase) ligase; PFAM: Biotin/lipoate A/B protein ligase; SPTR: Biotin-(Acetyl-CoA carboxylase) ligase; TIGRFAM: Biotin--acetyl-CoA-carboxylase ligase.
  
  
 0.667
EIJ36496.1
PFAM: Poly A polymerase head domain; TIGRFAM: poly(A) polymerase; COGs: COG0617 tRNA nucleotidyltransferase/poly(A) polymerase; InterPro IPR010206:IPR002646; KEGG: alv:Alvin_2758 poly(A) polymerase; PFAM: Polynucleotide adenylyltransferase region; SPTR: Poly(A) polymerase; TIGRFAM: Poly(A) polymerase, PcnB; manually curated.
 
  
0.650
EIJ35542.1
RNA-binding protein Hfq; PFAM: LSM domain; TIGRFAM: RNA chaperone Hfq; COGs: COG1923 Uncharacterized host factor I protein; HAMAP: Protein hfq; InterPro IPR005001:IPR001163; KEGG: tgr:Tgr7_0897 RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein, core; SPTR: Protein hfq; TIGRFAM: Host factor Hfq.
    
 
 0.648
EIJ33670.1
PFAM: Stringent starvation protein B; COGs: COG2969 Stringent starvation protein B; InterPro IPR007481; KEGG: eca:ECA0309 ClpXP protease specificity-enhancing factor; PFAM: Stringent starvation protein B; SPTR: Stringent starvation protein B.
  
     0.642
EIJ36659.1
PFAM: Enolase, N-terminal domain; Enolase, C-terminal TIM barrel domain; TIGRFAM: phosphopyruvate hydratase; COGs: COG0148 Enolase; HAMAP: Enolase; InterPro IPR000941:IPR020811:IPR020810:IPR003742; KEGG: tgr:Tgr7_1184 phosphopyruvate hydratase; PFAM: Enolase, C-terminal; Enolase, N-terminal; SPOUT methyltransferase, predicted; SPTR: Enolase; TIGRFAM: Enolase.
  
   0.624
EIJ35779.1
PFAM: Cytochrome C biogenesis protein transmembrane region; COGs: COG2836 conserved hypothetical protein; KEGG: hna:Hneap_0282 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.621
EIJ35780.1
PFAM: Hemimethylated DNA-binding protein YccV like; TIGRFAM: hemimethylated DNA binding domain; COGs: COG3785 conserved hypothetical protein; InterPro IPR011722; KEGG: tgr:Tgr7_2926 hemimethylated DNA-binding region; PFAM: Hemimethylated DNA-binding region; SPTR: Hemimethylated DNA-binding region; TIGRFAM: Hemimethylated DNA-binding region.
       0.621
EIJ34647.1
Bis(5'-nucleosyl)-tetraphosphatase, symmetrical; PFAM: Calcineurin-like phosphoesterase; TIGRFAM: bis(5'-nucleosyl)-tetraphosphatase (symmetrical); HAMAP: Bis(5'-nucleosyl)-tetraphosphatase, symmetrical; InterPro IPR004843:IPR004617; KEGG: tgr:Tgr7_2728 diadenosine tetraphosphatase; PFAM: Metallophosphoesterase; SPTR: Bis(5'-nucleosyl)-tetraphosphatase, symmetrical; TIGRFAM: Bis(5'-nucleosyl)-tetraphosphatase (symmetrical).
 
    0.610
Your Current Organism:
Thiothrix nivea
NCBI taxonomy Id: 870187
Other names: T. nivea DSM 5205, Thiothrix nivea DSM 5205, Thiothrix nivea JP2, Thiothrix nivea str. DSM 5205, Thiothrix nivea strain DSM 5205
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