Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EIJ35798.1Hypothetical protein; PFAM: Hpt domain. (112 aa)    
Predicted Functional Partners:
EIJ35799.1
Two component transcriptional regulator, LuxR family; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family; COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR001789:IPR000792; KEGG: lch:Lcho_1574 two component LuxR family transcriptional regulator; PFAM: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver region; SMART: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver region; SPTR: Two component transcriptional [...]
       0.768
EIJ35800.1
KEGG: spl:Spea_0317 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.751
EIJ35801.1
Proteinase inhibitor I25 cystatin; PFAM: Cystatin domain; InterPro IPR000010; KEGG: vpa:VP2967 hypothetical protein; PFAM: Proteinase inhibitor I25, cystatin; SPTR: Putative uncharacterized protein VP2967.
       0.471
Your Current Organism:
Thiothrix nivea
NCBI taxonomy Id: 870187
Other names: T. nivea DSM 5205, Thiothrix nivea DSM 5205, Thiothrix nivea JP2, Thiothrix nivea str. DSM 5205, Thiothrix nivea strain DSM 5205
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