Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EIJ35889.1RNA-directed DNA polymerase (Reverse transcriptase); PFAM: Reverse transcriptase (RNA-dependent DNA polymerase); InterPro IPR000477; KEGG: app:CAP2UW1_3089 reverse transcriptase family protein; PFAM: RNA-directed DNA polymerase (reverse transcriptase); SPTR: Reverse transcriptase family protein. (335 aa)    
Predicted Functional Partners:
EIJ32876.1
PFAM: CRISPR associated protein Cas2; InterPro IPR003799; KEGG: nhl:Nhal_2929 CRISPR-associated protein Cas2; SPTR: CRISPR-associated protein Cas2; manually curated.
   
   0.683
EIJ33761.1
PFAM: CRISPR associated protein Cas2; TIGRFAM: CRISPR-associated endoribonuclease Cas2; COGs: COG1343 Uncharacterized protein predicted to be involved in DNA repair; InterPro IPR003799; KEGG: nhl:Nhal_1947 CRISPR-associated protein Cas2; SPTR: CRISPR-associated protein Cas2; TIGRFAM: Protein of unknown function DUF196.
   
   0.683
EIJ35888.1
PFAM: Caspase domain; TIGRFAM: tol-pal system protein YbgF; COGs: COG1729 conserved hypothetical protein; InterPro IPR011600:IPR001440:IPR014162:IPR019734; KEGG: tgr:Tgr7_2227 hypothetical protein; PFAM: Peptidase C14, caspase catalytic; Tetratricopeptide TPR-1; SPTR: Putative uncharacterized protein; TIGRFAM: Tol-Pal system, YbgF.
       0.401
Your Current Organism:
Thiothrix nivea
NCBI taxonomy Id: 870187
Other names: T. nivea DSM 5205, Thiothrix nivea DSM 5205, Thiothrix nivea JP2, Thiothrix nivea str. DSM 5205, Thiothrix nivea strain DSM 5205
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