STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIJ36011.1PFAM: Peptidase family M23; COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR016047; KEGG: tgr:Tgr7_2406 peptidase M23; PFAM: Peptidase M23; SPTR: Peptidase M23. (522 aa)    
Predicted Functional Partners:
EIJ34821.1
Cell wall hydrolase/autolysin; PFAM: N-acetylmuramoyl-L-alanine amidase; Localisation of periplasmic protein complexes; COGs: COG0860 N-acetylmuramoyl-L-alanine amidase; InterPro IPR002508; KEGG: tkm:TK90_0493 N-acetylmuramoyl-L-alanine amidase; PFAM: Cell wall hydrolase/autolysin, catalytic; SMART: Cell wall hydrolase/autolysin, catalytic; SPTR: N-acetylmuramoyl-L-alanine amidase.
 
 
 0.695
EIJ36010.1
PFAM: Carbonic anhydrase; COGs: COG0288 Carbonic anhydrase; InterPro IPR001765; KEGG: mms:mma_2596 carbonic anhydrase; PFAM: Carbonic anhydrase; SPTR: Carbonic anhydrase.
  
    0.687
EIJ35787.1
ABC-type metal ion transporter, periplasmic subunit; PFAM: Periplasmic solute binding protein family; COGs: COG4531 ABC-type Zn2+ transport system periplasmic component/surface adhesin; InterPro IPR006127; KEGG: ara:Arad_2765 zinc uptake ABC transporter; PFAM: ABC transporter metal-binding lipoprotein; SPTR: Zinc uptake ABC transporter.
 
  
 0.678
EIJ33973.1
Penicillin-binding protein, 1A family; PFAM: Penicillin binding protein transpeptidase domain; Transglycosylase; TIGRFAM: penicillin-binding protein, 1A family; COGs: COG5009 Membrane carboxypeptidase/penicillin-binding protein; InterPro IPR011816:IPR001264:IPR001460; KEGG: tgr:Tgr7_3022 peptidoglycan glycosyltransferase; PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase; SPTR: Peptidoglycan glycosyltransferase; TIGRFAM: Penicillin-binding protein 1A.
  
   
 0.571
tyrS
tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 2 subfamily.
       0.559
EIJ32961.1
Aminodeoxychorismate lyase; PFAM: YceG-like family; TIGRFAM: conserved hypothetical protein, YceG family; COGs: COG1559 periplasmic solute-binding protein; InterPro IPR003770; KEGG: alv:Alvin_1887 aminodeoxychorismate lyase; PFAM: Uncharacterised protein family YceG-like; SPTR: Aminodeoxychorismate lyase; TIGRFAM: Uncharacterised protein family YceG-like.
  
   
 0.543
EIJ34113.1
Lytic transglycosylase catalytic; PFAM: Transglycosylase SLT domain; MLTD_N; LysM domain; InterPro IPR008258:IPR018392:IPR002482; KEGG: ppw:PputW619_3470 MltD domain-containing protein; PFAM: Lytic transglycosylase-like, catalytic; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup; SPTR: LysM domain protein.
 
 
 0.535
EIJ35668.1
PFAM: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; Sporulation related domain; TIGRFAM: rare lipoprotein A; COGs: COG0797 Lipoprotein; InterPro IPR012997:IPR005132:IPR007730; KEGG: hel:HELO_2200 lipoprotein A; PFAM: Rare lipoprotein A; Sporulation/cell division region, bacteria; SPTR: Lipoprotein; TIGRFAM: Rare lipoprotein A, bacterial.
  
 
 0.535
EIJ32857.1
PFAM: Transglycosylase; TIGRFAM: monofunctional biosynthetic peptidoglycan transglycosylase; COGs: COG0744 Membrane carboxypeptidase (penicillin-binding protein); HAMAP: Monofunctional biosynthetic peptidoglycan transglycosylase; InterPro IPR011812:IPR001264; KEGG: pmu:PM0324 monofunctional biosynthetic peptidoglycan transglycosylase; PFAM: Glycosyl transferase, family 51; SPTR: Monofunctional biosynthetic peptidoglycan transglycosylase; TIGRFAM: Monofunctional biosynthetic peptidoglycan transglycosylase.
  
   
 0.490
EIJ33612.1
PFAM: Protein of unknown function (DUF2796); KEGG: pfv:Psefu_0679 hypothetical protein; SPTR: Putative uncharacterized protein.
  
  
 0.467
Your Current Organism:
Thiothrix nivea
NCBI taxonomy Id: 870187
Other names: T. nivea DSM 5205, Thiothrix nivea DSM 5205, Thiothrix nivea JP2, Thiothrix nivea str. DSM 5205, Thiothrix nivea strain DSM 5205
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