Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EIJ36058.1Hypothetical protein. (112 aa)    
Predicted Functional Partners:
EIJ36057.1
KEGG: mhu:Mhun_0306 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.773
EIJ32876.1
PFAM: CRISPR associated protein Cas2; InterPro IPR003799; KEGG: nhl:Nhal_2929 CRISPR-associated protein Cas2; SPTR: CRISPR-associated protein Cas2; manually curated.
  
 
 0.750
EIJ33761.1
PFAM: CRISPR associated protein Cas2; TIGRFAM: CRISPR-associated endoribonuclease Cas2; COGs: COG1343 Uncharacterized protein predicted to be involved in DNA repair; InterPro IPR003799; KEGG: nhl:Nhal_1947 CRISPR-associated protein Cas2; SPTR: CRISPR-associated protein Cas2; TIGRFAM: Protein of unknown function DUF196.
  
 
 0.750
EIJ32873.1
CRISPR-associated exonuclease, Cas4 family; PFAM: Domain of unknown function DUF83; InterPro IPR013343; KEGG: nhl:Nhal_2927 hypothetical protein; PFAM: CRISPR-associated protein Cas4; SPTR: Putative uncharacterized protein.
   
 
 0.668
EIJ33763.1
PFAM: Domain of unknown function DUF83; TIGRFAM: CRISPR-associated protein Cas4; COGs: COG1468 RecB family exonuclease; InterPro IPR013343; KEGG: mca:MCA0652 CRISPR-associated Cas4 family protein; PFAM: CRISPR-associated protein Cas4; SPTR: CRISPR-associated protein Cas4; TIGRFAM: CRISPR-associated protein Cas4.
   
 
 0.668
EIJ36056.1
KEGG: mhu:Mhun_1629 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.620
EIJ36059.1
Addiction module toxin, Txe/YoeB family; PFAM: Plasmid encoded toxin Txe; TIGRFAM: toxin-antitoxin system, toxin component, Txe/YoeB family; COGs: COG4115 conserved hypothetical protein; InterPro IPR009614; KEGG: cyt:cce_4261 putative addiction module toxin, Txe/YoeB; PFAM: Addiction module toxin, Txe/YoeB; SPTR: Addiction module toxin, Txe/YoeB; TIGRFAM: Addiction module toxin, Txe/YoeB.
       0.417
EIJ36060.1
PFAM: Phd_YefM; TIGRFAM: prevent-host-death family protein; COGs: COG2161 Antitoxin of toxin-antitoxin stability system; InterPro IPR006442:IPR003756; KEGG: xne:XNC1_3746 Antitoxin YefM; SPTR: Prevent-host-death protein; TIGRFAM: Prevent-host-death protein.
       0.417
EIJ32943.1
PFAM: Bacterial DNA-binding protein; TIGRFAM: integration host factor, beta subunit; COGs: COG0776 Bacterial nucleoid DNA-binding protein; HAMAP: Integration host factor, beta subunit; InterPro IPR005685:IPR000119; KEGG: hha:Hhal_0562 integration host factor subunit beta; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein; SPTR: Integration host factor subunit beta; TIGRFAM: Integration host factor, beta subunit.
    
   0.406
EIJ33496.1
PFAM: Bacterial DNA-binding protein; TIGRFAM: integration host factor, alpha subunit; COGs: COG0776 Bacterial nucleoid DNA-binding protein; HAMAP: Integration host factor, alpha subunit; InterPro IPR005684:IPR000119; KEGG: alv:Alvin_0986 integration host factor subunit alpha; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein; SPTR: Integration host factor subunit alpha; TIGRFAM: Integration host factor, alpha subunit.
    
   0.406
Your Current Organism:
Thiothrix nivea
NCBI taxonomy Id: 870187
Other names: T. nivea DSM 5205, Thiothrix nivea DSM 5205, Thiothrix nivea JP2, Thiothrix nivea str. DSM 5205, Thiothrix nivea strain DSM 5205
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