STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIJ36071.1PFAM: ABC transporter; COGs: COG1134 ABC-type polysaccharide/polyol phosphate transport system ATPase component; InterPro IPR003593:IPR003439; KEGG: adk:Alide2_0627 Teichoic-acid-transporting ATPase; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: Wzt. (423 aa)    
Predicted Functional Partners:
EIJ36070.1
PFAM: ABC-2 type transporter; COGs: COG1682 ABC-type polysaccharide/polyol phosphate export systems permease component; InterPro IPR013525; KEGG: bph:Bphy_2314 ABC-2 type transporter; PFAM: ABC-2 type transporter; SPTR: ABC-2 type transporter.
 
 0.998
EIJ34254.1
PFAM: ABC-2 type transporter; COGs: COG1682 ABC-type polysaccharide/polyol phosphate export systems permease component; InterPro IPR013525; KEGG: cti:RALTA_B1927 ABC-2 type transport system permease protein, lps efflux transporter; PFAM: ABC-2 type transporter; SPTR: ABC-2 type transport system permease protein, LPS efflux transporter.
 
 0.993
EIJ35970.1
PFAM: ABC-2 type transporter; COGs: COG1682 ABC-type polysaccharide/polyol phosphate export systems permease component; InterPro IPR013525; KEGG: dae:Dtox_4137 ABC-2 type transporter; PFAM: ABC-2 type transporter; SPTR: ABC-2 type transporter; manually curated.
 
 0.993
EIJ36073.1
Methyltransferase type 12; PFAM: Methionine biosynthesis protein MetW; InterPro IPR013217; KEGG: del:DelCs14_5196 family 2 glycosyl transferase; PFAM: Methyltransferase type 12; SPTR: Glycosyl transferase family 2.
 
  
  0.843
EIJ36072.1
PFAM: Bacterial lipid A biosynthesis acyltransferase; COGs: COG1560 Lauroyl/myristoyl acyltransferase; InterPro IPR004960; KEGG: adk:Alide2_0628 hypothetical protein; PFAM: Bacterial lipid A biosynthesis acyltransferase; SPTR: Putative uncharacterized protein.
 
     0.806
EIJ36075.1
PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E; COGs: COG5610 hydrolase (HAD superfamily); InterPro IPR005834; KEGG: nhl:Nhal_3626 haloacid dehalogenase; PFAM: Haloacid dehalogenase-like hydrolase; SPTR: Haloacid dehalogenase-like hydrolase domain protein.
 
    0.729
EIJ36074.1
PFAM: Glycosyl transferase family 2; COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: noc:Noc_2176 glycosyl transferase family protein; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase, family 2.
 
    0.703
EIJ36077.1
PFAM: Glycosyl transferase family 2; COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: din:Selin_2470 family 2 glycosyl transferase; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase family 2.
 
    0.689
EIJ36078.1
PFAM: Glycosyl transferase family 2; COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: afr:AFE_0082 O antigen biosynthesis rhamnosyltransferase, putative; PFAM: Glycosyl transferase, family 2; SPTR: O antigen biosynthesis rhamnosyltransferase, putative.
 
  
 0.639
EIJ33127.1
PFAM: Polysaccharide biosynthesis/export protein; SLBB domain; COGs: COG1596 Periplasmic protein involved in polysaccharide export; InterPro IPR003715:IPR019554; KEGG: noc:Noc_1525 polysaccharide export protein; PFAM: Polysaccharide export protein; Soluble ligand binding domain; SPTR: Polysaccharide export protein.
  
  
 0.609
Your Current Organism:
Thiothrix nivea
NCBI taxonomy Id: 870187
Other names: T. nivea DSM 5205, Thiothrix nivea DSM 5205, Thiothrix nivea JP2, Thiothrix nivea str. DSM 5205, Thiothrix nivea strain DSM 5205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.