STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIJ36254.1PFAM: MerR family regulatory protein; Resolvase, N terminal domain; TIGRFAM: DNA binding domain, excisionase family; COGs: COG2452 site-specific integrase-resolvase; InterPro IPR000551:IPR006119; KEGG: min:Minf_2376 transposon IS605 OrfA, integrase-resolvase; PFAM: Resolvase, N-terminal; HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR; SPTR: Transposon IS605 OrfA, integrase-resolvase. (210 aa)    
Predicted Functional Partners:
EIJ35222.1
PFAM: domain; Pyruvate ferredoxin/flavodoxin oxidoreductase; Transketolase, C-terminal domain; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; COGs: COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase alpha subunit; InterPro IPR002880:IPR019752:IPR001450:IPR011766; KEGG: alv:Alvin_1172 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein; PFAM: Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal; Pyruvate/ketoisovalerate oxidoreductase; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; Thiamine pyrophosphate [...]
    
  0.957
EIJ36253.1
Transposase, IS605 OrfB family; PFAM: Helix-turn-helix domain; Putative transposase DNA-binding domain; Probable transposase; TIGRFAM: transposase, IS605 OrfB family, central region; COGs: COG0675 Transposase and inactivated derivatives; InterPro IPR010095:IPR001959; KEGG: min:Minf_1900 transposon IS605 OrfB; PFAM: Transposase, probable, IS891/IS1136/IS1341; Transposase, IS605 OrfB, C-terminal; SPTR: Transposon IS605 OrfB; TIGRFAM: Transposase, IS605 OrfB, C-terminal.
 
  
 0.953
EIJ36252.1
PFAM: Bacterial protein of unknown function (DUF924); COGs: COG3803 conserved hypothetical protein; InterPro IPR010323; KEGG: hna:Hneap_0689 hypothetical protein; PFAM: Protein of unknown function DUF924, bacterial; SPTR: Putative uncharacterized protein.
       0.727
EIJ34944.1
Restriction endonuclease, type II, MjaII; PFAM: MjaII restriction endonuclease; InterPro IPR019045; KEGG: cyh:Cyan8802_4357 hypothetical protein; PFAM: Restriction endonuclease, type II, MjaII; SPTR: Putative uncharacterized protein.
  
     0.497
EIJ35884.1
KEGG: rrs:RoseRS_1945 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.485
EIJ36255.1
PFAM: NAD dependent epimerase/dehydratase family; COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: alv:Alvin_0474 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: NAD-dependent epimerase/dehydratase.
       0.440
EIJ36256.1
Hypothetical protein.
       0.440
Your Current Organism:
Thiothrix nivea
NCBI taxonomy Id: 870187
Other names: T. nivea DSM 5205, Thiothrix nivea DSM 5205, Thiothrix nivea JP2, Thiothrix nivea str. DSM 5205, Thiothrix nivea strain DSM 5205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.