Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EIJ36346.1Transposase IS4 family protein; PFAM: Transposase DDE domain; InterPro IPR002559; KEGG: pcu:pc1492 hypothetical protein; PFAM: Transposase, IS4-like; SPTR: Putative uncharacterized protein. (292 aa)    
Predicted Functional Partners:
EIJ36347.1
PFAM: Protein export membrane protein; SecD/SecF GG Motif; TIGRFAM: protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecF; COGs: COG0341 Preprotein translocase subunit SecF; InterPro IPR005665:IPR003335; KEGG: mfa:Mfla_0511 preprotein translocase subunit SecF; PFAM: SecD/SecF/SecDF export membrane protein; SPTR: Protein translocase subunit secF; TIGRFAM: SecF protein; SecD/SecF/SecDF export membrane protein.
       0.467
EIJ36348.1
PFAM: Protein export membrane protein; SecD/SecF GG Motif; TIGRFAM: protein-export membrane protein SecD; protein-export membrane protein, SecD/SecF family; COGs: COG0342 Preprotein translocase subunit SecD; InterPro IPR005791:IPR003335; KEGG: tgr:Tgr7_2066 preprotein translocase subunit SecD; PFAM: SecD/SecF/SecDF export membrane protein; SPTR: Preprotein translocase subunit SecD; TIGRFAM: SecD export membrane protein; SecD/SecF/SecDF export membrane protein.
       0.458
EIJ37019.1
PilT protein domain protein; PFAM: PIN domain; COGs: COG4113 nucleic acid-binding protein contains PIN domain; InterPro IPR002716; KEGG: cch:Cag_0450 hypothetical protein; PFAM: PilT protein, N-terminal; SPTR: Putative uncharacterized protein; manually curated.
  
     0.437
Your Current Organism:
Thiothrix nivea
NCBI taxonomy Id: 870187
Other names: T. nivea DSM 5205, Thiothrix nivea DSM 5205, Thiothrix nivea JP2, Thiothrix nivea str. DSM 5205, Thiothrix nivea strain DSM 5205
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