Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EIJ36592.1Hypothetical protein; PFAM: MTH538 TIR-like domain (DUF1863); KEGG: dpr:Despr_1508 TIR protein; SPTR: TIR protein. (449 aa)    
Predicted Functional Partners:
EIJ36593.1
WD40 repeat-containing protein; PFAM: WD domain, G-beta repeat; COGs: COG2319 FOG: WD40 repeat; InterPro IPR001680:IPR019781; KEGG: app:CAP2UW1_3570 WD-40 repeat-containing protein; PFAM: WD40 repeat, subgroup; SPTR: WD-40 repeat protein.
       0.777
EIJ36591.1
PFAM: Protein of unknown function (DUF1703); Predicted AAA-ATPase; InterPro IPR018631:IPR012547; KEGG: gpb:HDN1F_31390 hypothetical protein; PFAM: AAA-ATPase-like; Protein of unknown function DUF1703; SPTR: Putative uncharacterized protein.
       0.501
Your Current Organism:
Thiothrix nivea
NCBI taxonomy Id: 870187
Other names: T. nivea DSM 5205, Thiothrix nivea DSM 5205, Thiothrix nivea JP2, Thiothrix nivea str. DSM 5205, Thiothrix nivea strain DSM 5205
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