STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIJ36643.1Transferase hexapeptide repeat containing protein; COGs: COG0110 Acetyltransferase (isoleucine patch superfamily); InterPro IPR001451; KEGG: mmt:Metme_1858 transferase hexapeptide repeat containing protein; SPTR: Putative polysaccharide acetyltransferase protein. (152 aa)    
Predicted Functional Partners:
EIJ36649.1
dTDP-glucose 4,6-dehydratase; PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: dTDP-glucose 4,6-dehydratase; COGs: COG1088 dTDP-D-glucose 4 6-dehydratase; InterPro IPR005888:IPR001509; KEGG: ttu:TERTU_4328 dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: dTDP-glucose 4,6-dehydratase; TIGRFAM: dTDP-glucose 4,6-dehydratase.
 
 
 0.907
EIJ36640.1
PFAM: Bacterial sugar transferase; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; COGs: COG2148 Sugar transferase involved in lipopolysaccharide synthesis; InterPro IPR017473:IPR017475:IPR003362; KEGG: tcx:Tcr_1675 undecaprenyl-phosphate galactosephosphotransferase; PFAM: Bacterial sugar transferase; SPTR: Undecaprenyl-phosphate glucose phosphotransferase; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase, WcaJ; Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
  
  
 0.891
EIJ34210.1
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family; COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR000653; KEGG: cvi:CV_4034 aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; SPTR: Probable aminotransferase.
  
 
 0.882
EIJ36645.1
PFAM: Polysaccharide biosynthesis protein; COGs: COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; InterPro IPR002797; KEGG: pmx:PERMA_1999 putative polysaccharide biosynthesis protein; PFAM: Polysaccharide biosynthesis protein; SPTR: Polysaccharide biosynthesis protein.
 
  
 0.872
EIJ36651.1
PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; COGs: COG1898 dTDP-4-dehydrorhamnose 3 5-epimerase; InterPro IPR000888; KEGG: aeh:Mlg_2320 dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; SPTR: dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related.
  
 
  0.868
EIJ36644.1
Hypothetical protein; KEGG: smk:Sinme_5174 O-antigen polymerase; SPTR: Putative uncharacterized protein.
 
     0.860
EIJ36642.1
PFAM: Glycosyl transferase family 2; COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: dsh:Dshi_4145 glycosyl transferase family protein; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase, group 2 family protein; overlaps another CDS with the same product name.
 
   
 0.853
EIJ36646.1
PFAM: Glycosyltransferase family 28 C-terminal domain; COGs: COG5017 conserved hypothetical protein; InterPro IPR007235; KEGG: rle:RL3655 glycosyltransferase; PFAM: Glycosyl transferase, family 28, C-terminal; SPTR: PssE.
 
     0.853
EIJ36647.1
PFAM: Oligosaccharide biosynthesis protein Alg14 like; InterPro IPR013969; KEGG: dsh:Dshi_4133 oligosaccharide biosynthesis protein Alg14-like protein; PFAM: Oligosaccharide biosynthesis protein Alg14 like; SPTR: Oligosaccharide biosynthesis protein Alg14 like protein.
 
    0.848
EIJ36641.1
PFAM: Glycosyl transferase family 2; InterPro IPR001173; KEGG: fre:Franean1_0757 glycosyl transferase family protein; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase, group 2 family protein; overlaps another CDS with the same product name.
 
  
 0.846
Your Current Organism:
Thiothrix nivea
NCBI taxonomy Id: 870187
Other names: T. nivea DSM 5205, Thiothrix nivea DSM 5205, Thiothrix nivea JP2, Thiothrix nivea str. DSM 5205, Thiothrix nivea strain DSM 5205
Server load: medium (54%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.