Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EIJ36813.1PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; COGs: COG4948 L-alanine-DL-glutamate epimerase; InterPro IPR013341:IPR013342; KEGG: mci:Mesci_5761 mandelate racemase/muconate lactonizing protein; PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; Mandelate racemase/muconate lactonizing enzyme, N-terminal; SPTR: Mandelate racemase/muconate lactonizing protein. (369 aa)    
Predicted Functional Partners:
EIJ36812.1
Methyltransferase type 12; PFAM: Methyltransferase domain; InterPro IPR013217; KEGG: mci:Mesci_5766 methyltransferase type 11; PFAM: Methyltransferase type 12; SPTR: Methyltransferase domain protein.
 
     0.742
EIJ36809.1
Arginase/agmatinase/formiminoglutamase; PFAM: Arginase family; TIGRFAM: arginase; COGs: COG0010 Arginase/agmatinase/formimionoglutamate hydrolase arginase family; InterPro IPR006035; KEGG: nve:NEMVE_v1g224716 hypothetical protein; PFAM: Ureohydrolase; SPTR: Predicted protein.
     
 0.637
EIJ36810.1
3-dehydroquinate dehydratase; PFAM: Dehydroquinase class II; COGs: COG0757 3-dehydroquinate dehydratase II; HAMAP: Dehydroquinase, class II; InterPro IPR001874; KEGG: csa:Csal_2283 3-dehydroquinate dehydratase; PFAM: Dehydroquinase, class II; SPTR: 3-dehydroquinate dehydratase.
       0.631
EIJ36811.1
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; COGs: COG1052 Lactate dehydrogenase and related dehydrogenase; InterPro IPR006139:IPR006140; KEGG: nda:Ndas_2257 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; SPTR: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein.
       0.631
EIJ36747.1
PFAM: HpcH/HpaI aldolase/citrate lyase family; TIGRFAM: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; COGs: COG3836 2 4-dihydroxyhept-2-ene-1 7-dioic acid aldolase; InterPro IPR005000; KEGG: dar:Daro_3804 HpcH/HpaI aldolase; PFAM: HpcH/HpaI aldolase; SPTR: 2,4-dihydroxyhept-2-enedioate aldolase.
 
 
 0.601
EIJ34964.1
KEGG: dze:Dd1591_0936 Appr-1-p processing domain-containing protein; SPTR: Appr-1-p processing domain protein.
    
   0.571
EIJ36953.1
KEGG: spv:SPH_1264 hypothetical protein; SPTR: Putative uncharacterized protein.
    
   0.571
EIJ36971.1
Appr-1-p processing domain protein; PFAM: Macro domain; COGs: COG2110 phosphatase homologous to the C-terminal domain of histone macroH2A1; InterPro IPR002589; KEGG: has:Halsa_0593 Appr-1-p processing domain protein; PFAM: Appr-1-p processing; SMART: Appr-1-p processing; SPTR: Putative uncharacterized protein.
    
   0.571
EIJ34178.1
PFAM: Dienelactone hydrolase family; COGs: COG0412 Dienelactone hydrolase; InterPro IPR002925; KEGG: mgm:Mmc1_0347 dienelactone hydrolase; PFAM: Dienelactone hydrolase; SPTR: Dienelactone hydrolase family.
   
 
  0.512
EIJ36814.1
Pyruvate carboxyltransferase; PFAM: HMGL-like; COGs: COG0119 Isopropylmalate/homocitrate/citramalate synthase; InterPro IPR000891; KEGG: nda:Ndas_2258 pyruvate carboxyltransferase; PFAM: Pyruvate carboxyltransferase; SPTR: Pyruvate carboxyltransferase.
       0.494
Your Current Organism:
Thiothrix nivea
NCBI taxonomy Id: 870187
Other names: T. nivea DSM 5205, Thiothrix nivea DSM 5205, Thiothrix nivea JP2, Thiothrix nivea str. DSM 5205, Thiothrix nivea strain DSM 5205
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