STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIJ36971.1Appr-1-p processing domain protein; PFAM: Macro domain; COGs: COG2110 phosphatase homologous to the C-terminal domain of histone macroH2A1; InterPro IPR002589; KEGG: has:Halsa_0593 Appr-1-p processing domain protein; PFAM: Appr-1-p processing; SMART: Appr-1-p processing; SPTR: Putative uncharacterized protein. (241 aa)    
Predicted Functional Partners:
EIJ34964.1
KEGG: dze:Dd1591_0936 Appr-1-p processing domain-containing protein; SPTR: Appr-1-p processing domain protein.
 
     0.976
EIJ36972.1
KEGG: cyj:Cyan7822_4726 hypothetical protein; SPTR: Putative uncharacterized protein.
 
   
 0.943
EIJ36973.1
KEGG: ftn:FTN_1489 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.488
EIJ34741.1
PFAM: Histone deacetylase domain; COGs: COG0123 Deacetylase including yeast histone deacetylase and acetoin utilization protein; InterPro IPR000286; KEGG: alv:Alvin_1729 histone deacetylase; PFAM: Histone deacetylase superfamily; SPTR: Histone deacetylase.
    
  0.427
Your Current Organism:
Thiothrix nivea
NCBI taxonomy Id: 870187
Other names: T. nivea DSM 5205, Thiothrix nivea DSM 5205, Thiothrix nivea JP2, Thiothrix nivea str. DSM 5205, Thiothrix nivea strain DSM 5205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.