STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpu_00540Hypothetical protein; Required for morphogenesis under gluconeogenic growth conditions; Belongs to the gluconeogenesis factor family. (413 aa)    
Predicted Functional Partners:
cpu_00530
Nucleotide-binding protein; Displays ATPase and GTPase activities.
  
  
 0.972
whiA
DNA-binding protein WhiA; Involved in cell division and chromosome segregation.
  
  
 0.923
cpu_00520
Phosphotransferase.
       0.784
cpu_00550
Polysaccharide deacetylase.
  
    0.783
cpu_00510
Hypothetical protein.
       0.764
cpu_22310
Serine/threonine protein phosphatase.
  
  
 0.731
uvrC
Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.
       0.712
cpu_00490
Haloacid dehalogenase.
       0.710
cpu_00500
Alpha-hydroxy-acid oxidizing enzyme.
       0.691
cpu_00460
Hypothetical protein.
       0.607
Your Current Organism:
Carboxydothermus pertinax
NCBI taxonomy Id: 870242
Other names: C. pertinax, Carboxydothermus pertinax Yoneda et al. 2012, Carboxydothermus sp. Ug1, DSM 23698, NBRC 107576, strain Ug1
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