Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
cpu_00580Acetyltransferase. (162 aa)    
Predicted Functional Partners:
cpu_00590
Hypothetical protein.
 
     0.936
cpu_24710
Sugar transferase.
  
  
 0.919
whiA
DNA-binding protein WhiA; Involved in cell division and chromosome segregation.
       0.799
cpu_00570
MBL fold metallo-hydrolase.
       0.789
cpu_11140
dTDP-4-amino-4,6-dideoxygalactose transaminase; Belongs to the DegT/DnrJ/EryC1 family.
 
 
 0.774
cpu_24760
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.752
cpu_10550
Putative protein MJ1066; Belongs to the DegT/DnrJ/EryC1 family.
  
 
 0.742
cpu_07110
UDP-N-acetyl glucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
  
 
 0.657
cpu_00600
RNA polymerase sigma-54 factor.
  
  
 0.630
cpu_00530
Nucleotide-binding protein; Displays ATPase and GTPase activities.
       0.548
Your Current Organism:
Carboxydothermus pertinax
NCBI taxonomy Id: 870242
Other names: C. pertinax, Carboxydothermus pertinax Yoneda et al. 2012, Carboxydothermus sp. Ug1, DSM 23698, NBRC 107576, strain Ug1
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