STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpu_01690Hypothetical protein. (303 aa)    
Predicted Functional Partners:
cpu_12700
Nitrate ABC transporter ATP-binding protein.
  
 
 0.838
cpu_12690
Taurine ABC transporter permease.
  
 
 0.811
cpu_03310
ABC transporter substrate-binding protein.
    
 0.657
cpu_20790
HDIG domain-containing protein.
    
 0.657
cpu_12430
(2Fe-2S)-binding protein.
  
 
 0.462
cpu_04770
NADH dehydrogenase.
       0.459
cpu_13140
Flavin reductase.
  
 
  0.441
cpu_07570
Sensor domain-containing diguanylate cyclase.
    
  0.435
Your Current Organism:
Carboxydothermus pertinax
NCBI taxonomy Id: 870242
Other names: C. pertinax, Carboxydothermus pertinax Yoneda et al. 2012, Carboxydothermus sp. Ug1, DSM 23698, NBRC 107576, strain Ug1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.