STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpu_01730Germination protein. (385 aa)    
Predicted Functional Partners:
cpu_01720
Spore germination protein.
 
  
 0.981
cpu_21570
Hypothetical protein.
  
 0.878
cpu_08350
Hypothetical protein.
 
  
 0.877
cpu_16180
Germination protein YpeB.
 
     0.785
cpu_01740
Hypothetical protein.
       0.756
cpu_08280
Sporulation protein YtfJ.
  
     0.744
cpu_08880
Stage III sporulation protein AB.
  
     0.730
cpu_08850
Stage III sporulation protein AE.
  
     0.698
cpu_25120
Stage II sporulation protein E.
  
     0.686
cpu_22100
Sporulation integral membrane protein YlbJ.
  
     0.685
Your Current Organism:
Carboxydothermus pertinax
NCBI taxonomy Id: 870242
Other names: C. pertinax, Carboxydothermus pertinax Yoneda et al. 2012, Carboxydothermus sp. Ug1, DSM 23698, NBRC 107576, strain Ug1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.