cpu_02400 protein (Carboxydothermus pertinax)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

cpu_02400

Dipeptidase PepV. (465 aa)

Predicted Functional Partners:

dapF

0.909

cpu_03170

0.806

cpu_03230

0.806

argG

0.791

argC

0.771

argD

0.767

dapL

0.735

argB

0.664

cpu_02390

0.660

cpu_21890

0.660

Your Current Organism:

Carboxydothermus pertinax

NCBI taxonomy Id: 870242
Other names: C. pertinax, Carboxydothermus pertinax Yoneda et al. 2012, Carboxydothermus sp. Ug1, DSM 23698, NBRC 107576, strain Ug1

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
argB	argC	cpu_23750	cpu_23730	Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.	N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily.	0.999
argB	argD	cpu_23750	cpu_23760	Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.	Aspartate aminotransferase family protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.	0.989
argB	argG	cpu_23750	cpu_23780	Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.	Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.	0.979
argB	cpu_02400	cpu_23750	cpu_02400	Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.	Dipeptidase PepV.	0.664
argB	cpu_21890	cpu_23750	cpu_21890	Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.	Aspartate aminotransferase family protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.912
argC	argB	cpu_23730	cpu_23750	N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily.	Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.	0.999
argC	argD	cpu_23730	cpu_23760	N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily.	Aspartate aminotransferase family protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.	0.996
argC	argG	cpu_23730	cpu_23780	N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily.	Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.	0.982
argC	cpu_02400	cpu_23730	cpu_02400	N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily.	Dipeptidase PepV.	0.771
argC	cpu_21890	cpu_23730	cpu_21890	N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily.	Aspartate aminotransferase family protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.944
argD	argB	cpu_23760	cpu_23750	Aspartate aminotransferase family protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.	Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.	0.989
argD	argC	cpu_23760	cpu_23730	Aspartate aminotransferase family protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.	N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily.	0.996
argD	argG	cpu_23760	cpu_23780	Aspartate aminotransferase family protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.	Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.	0.935
argD	cpu_02400	cpu_23760	cpu_02400	Aspartate aminotransferase family protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.	Dipeptidase PepV.	0.767
argG	argB	cpu_23780	cpu_23750	Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.	Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.	0.979
argG	argC	cpu_23780	cpu_23730	Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.	N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily.	0.982
argG	argD	cpu_23780	cpu_23760	Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.	Aspartate aminotransferase family protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.	0.935
argG	cpu_02400	cpu_23780	cpu_02400	Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.	Dipeptidase PepV.	0.791
argG	cpu_21890	cpu_23780	cpu_21890	Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.	Aspartate aminotransferase family protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.798
argG	dapF	cpu_23780	cpu_22450	Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.	Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.	0.596