STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpu_02500Phosphatase. (276 aa)    
Predicted Functional Partners:
rnc
Ribonuclease 3; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
      0.903
cpu_16010
Pyruvate kinase; Belongs to the pyruvate kinase family.
    
  0.581
cpu_04770
NADH dehydrogenase.
    
  0.496
cpu_05400
DNA internalization-related competence protein ComEC/Rec2.
       0.478
rny
Ribonuclease Y; Endoribonuclease that initiates mRNA decay.
       0.467
cpu_12510
Hypothetical protein.
       0.456
cpu_02510
ABC transporter ATP-binding protein.
       0.448
cpu_02520
ABC transporter ATP-binding protein.
       0.448
cpu_02530
ABC transporter; Belongs to the binding-protein-dependent transport system permease family.
       0.448
cpu_02540
Branched-chain amino acid ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.
       0.448
Your Current Organism:
Carboxydothermus pertinax
NCBI taxonomy Id: 870242
Other names: C. pertinax, Carboxydothermus pertinax Yoneda et al. 2012, Carboxydothermus sp. Ug1, DSM 23698, NBRC 107576, strain Ug1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.