STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpu_02590Basic membrane protein A. (330 aa)    
Predicted Functional Partners:
cpu_02560
Heme ABC transporter ATP-binding protein.
 
 
 0.980
cpu_02570
Simple sugar transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.966
cpu_02580
Nucleoside ABC transporter membrane protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.966
cpu_22870
ABC transporter ATP-binding protein.
 
 
 0.951
cpu_22850
Putative sugar ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.917
cpu_22860
ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.916
guaA
GMP synthetase; Catalyzes the synthesis of GMP from XMP.
     
 0.458
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
     
 0.430
cpu_02970
sigma-E processing peptidase SpoIIGA.
   
    0.422
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
       0.417
Your Current Organism:
Carboxydothermus pertinax
NCBI taxonomy Id: 870242
Other names: C. pertinax, Carboxydothermus pertinax Yoneda et al. 2012, Carboxydothermus sp. Ug1, DSM 23698, NBRC 107576, strain Ug1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.