Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
cpu_03220Copper oxidase. (569 aa)    
Predicted Functional Partners:
cpu_10190
Haloacid dehalogenase.
 
 
 0.804
tatC
Preprotein translocase subunit TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes.
    
 
 0.784
cpu_03310
ABC transporter substrate-binding protein.
  
 0.717
cpu_20790
HDIG domain-containing protein.
  
 0.717
guaA
GMP synthetase; Catalyzes the synthesis of GMP from XMP.
  
 
  0.665
cpu_24240
Hypothetical protein.
  
  
 0.630
cpu_11310
Formate dehydrogenase-N subunit alpha; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
  
  0.614
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
   
 
 0.547
cpu_06710
Nitrate reductase.
  
  
  0.517
cpu_07680
Cytochrome c552; Belongs to the cytochrome c-552 family.
     
 0.503
Your Current Organism:
Carboxydothermus pertinax
NCBI taxonomy Id: 870242
Other names: C. pertinax, Carboxydothermus pertinax Yoneda et al. 2012, Carboxydothermus sp. Ug1, DSM 23698, NBRC 107576, strain Ug1
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