Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cpu_03230Heterodisulfide reductase. (890 aa)    
Predicted Functional Partners:
cpu_05730
Hypothetical protein.
  
 0.916
cpu_16010
Pyruvate kinase; Belongs to the pyruvate kinase family.
   
 0.909
cpu_04770
NADH dehydrogenase.
  
 0.906
cpu_17310
(Fe-S)-binding protein.
   
 0.889
cpu_11900
Hypothetical protein.
  
 0.878
cpu_08810
Pyruvate carboxylase subunit B.
    
 0.875
cpu_22090
Phosphate acetyltransferase.
  
 
 0.855
cpu_16810
Pyruvate, phosphate dikinase; Belongs to the PEP-utilizing enzyme family.
    
 0.854
cpu_12570
Protein FixA.
  
 0.835
cpu_25400
Electron transfer flavoprotein subunit beta.
  
 0.835
Your Current Organism:
Carboxydothermus pertinax
NCBI taxonomy Id: 870242
Other names: C. pertinax, Carboxydothermus pertinax Yoneda et al. 2012, Carboxydothermus sp. Ug1, DSM 23698, NBRC 107576, strain Ug1
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