STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpu_03320ADP-ribosylglycohydrolase. (309 aa)    
Predicted Functional Partners:
cpu_03330
Membrane protein.
     
 0.767
cpu_14170
Nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
    
 
 0.729
cpu_19890
Nitrogen fixation nifHD region glnB 1; Belongs to the P(II) protein family.
    
 
 0.729
cpu_19900
Nitrogen fixation nifHD region glnB 2; Belongs to the P(II) protein family.
    
 
 0.729
cpu_14120
Carbohydrate kinase.
     
 0.516
cpu_07550
RNase III inhibitor.
    
 0.500
cpu_03340
Membrane protein.
     
 0.499
nifH
Nitrogenase iron protein; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein; Belongs to the NifH/BchL/ChlL family.
 
   
 0.428
Your Current Organism:
Carboxydothermus pertinax
NCBI taxonomy Id: 870242
Other names: C. pertinax, Carboxydothermus pertinax Yoneda et al. 2012, Carboxydothermus sp. Ug1, DSM 23698, NBRC 107576, strain Ug1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.